Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HUZ91_RS08385 | Genome accession | NZ_CP055070 |
| Coordinates | 1753111..1753617 (-) | Length | 168 a.a. |
| NCBI ID | WP_000168274.1 | Uniprot ID | A0A9X0Q0X8 |
| Organism | Shigella flexneri strain SWHIN_97 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1748866..1788375 | 1753111..1753617 | within | 0 |
Gene organization within MGE regions
Location: 1748866..1788375
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ91_RS08345 (HUZ91_08300) | - | 1749743..1749934 (-) | 192 | WP_000132739.1 | AlpA family phage regulatory protein | - |
| HUZ91_RS08350 (HUZ91_08305) | - | 1750012..1750356 (-) | 345 | WP_181464054.1 | hypothetical protein | - |
| HUZ91_RS08355 (HUZ91_08310) | - | 1750457..1750636 (-) | 180 | WP_032169734.1 | Eag protein | - |
| HUZ91_RS08360 (HUZ91_08315) | - | 1750733..1751392 (-) | 660 | WP_152061863.1 | DUF551 domain-containing protein | - |
| HUZ91_RS08365 (HUZ91_08320) | - | 1751389..1751994 (-) | 606 | WP_239606144.1 | ead/Ea22-like family protein | - |
| HUZ91_RS08370 (HUZ91_08325) | - | 1751982..1752626 (-) | 645 | WP_239606145.1 | hypothetical protein | - |
| HUZ91_RS08375 (HUZ91_08330) | - | 1752623..1752790 (-) | 168 | WP_016242508.1 | DUF2737 family protein | - |
| HUZ91_RS08380 (HUZ91_08335) | - | 1752801..1753097 (-) | 297 | WP_001111336.1 | phage anti-RecBCD protein | - |
| HUZ91_RS08385 (HUZ91_08340) | ssb | 1753111..1753617 (-) | 507 | WP_000168274.1 | single-stranded DNA-binding protein | Machinery gene |
| HUZ91_RS08390 (HUZ91_08345) | - | 1753618..1754325 (-) | 708 | WP_053880671.1 | Rad52/Rad22 family DNA repair protein | - |
| HUZ91_RS08395 (HUZ91_08350) | - | 1754334..1754504 (-) | 171 | WP_000050554.1 | hypothetical protein | - |
| HUZ91_RS08400 (HUZ91_08355) | - | 1754580..1754750 (-) | 171 | WP_001183771.1 | hypothetical protein | - |
| HUZ91_RS08405 (HUZ91_08360) | - | 1754990..1755178 (-) | 189 | WP_021549877.1 | hypothetical protein | - |
| HUZ91_RS08410 (HUZ91_08365) | - | 1755187..1755513 (-) | 327 | WP_000378298.1 | antitermination protein N | - |
| HUZ91_RS24770 | - | 1755555..1755683 (-) | 129 | WP_000682198.1 | hypothetical protein | - |
| HUZ91_RS08415 (HUZ91_08370) | - | 1756058..1756369 (-) | 312 | WP_001418420.1 | hypothetical protein | - |
| HUZ91_RS08420 (HUZ91_08375) | - | 1756459..1757091 (-) | 633 | WP_000028393.1 | LexA family transcriptional regulator | - |
| HUZ91_RS08425 (HUZ91_08380) | - | 1757195..1757410 (+) | 216 | WP_001194218.1 | helix-turn-helix transcriptional regulator | - |
| HUZ91_RS08430 (HUZ91_08385) | - | 1757530..1757808 (+) | 279 | WP_001177649.1 | lambda phage CII family protein | - |
| HUZ91_RS08435 (HUZ91_08390) | - | 1757843..1758004 (+) | 162 | WP_000166961.1 | hypothetical protein | - |
| HUZ91_RS08440 (HUZ91_08395) | - | 1757991..1758881 (+) | 891 | WP_024190675.1 | hypothetical protein | - |
| HUZ91_RS08445 (HUZ91_08400) | - | 1758871..1760307 (+) | 1437 | WP_047659744.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| HUZ91_RS08450 (HUZ91_08405) | - | 1760383..1760589 (+) | 207 | WP_001535915.1 | hypothetical protein | - |
| HUZ91_RS08455 (HUZ91_08410) | - | 1760607..1760924 (+) | 318 | WP_239606148.1 | hypothetical protein | - |
| HUZ91_RS08460 (HUZ91_08415) | - | 1760929..1761183 (+) | 255 | WP_023145903.1 | hypothetical protein | - |
| HUZ91_RS08465 (HUZ91_08420) | - | 1761164..1761604 (+) | 441 | WP_016238076.1 | recombination protein NinB | - |
| HUZ91_RS08470 (HUZ91_08425) | - | 1761601..1762128 (+) | 528 | WP_000153288.1 | phage N-6-adenine-methyltransferase | - |
| HUZ91_RS08475 (HUZ91_08430) | - | 1762125..1762301 (+) | 177 | WP_112918099.1 | NinE family protein | - |
| HUZ91_RS08480 (HUZ91_08435) | - | 1762304..1762687 (+) | 384 | WP_096313554.1 | phage protein NinX family protein | - |
| HUZ91_RS08485 (HUZ91_08440) | - | 1762680..1762856 (+) | 177 | WP_044066505.1 | protein NinF | - |
| HUZ91_RS08490 (HUZ91_08445) | - | 1762849..1763118 (+) | 270 | WP_016242496.1 | hypothetical protein | - |
| HUZ91_RS08495 (HUZ91_08450) | - | 1763118..1763408 (+) | 291 | WP_000002228.1 | DUF1364 domain-containing protein | - |
| HUZ91_RS08500 (HUZ91_08455) | - | 1763405..1763767 (+) | 363 | WP_001008180.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HUZ91_RS08505 (HUZ91_08460) | - | 1763764..1763952 (+) | 189 | WP_000994516.1 | protein ninH | - |
| HUZ91_RS08510 (HUZ91_08465) | - | 1763949..1764572 (+) | 624 | WP_001235461.1 | antitermination protein | - |
| HUZ91_RS08515 (HUZ91_08470) | - | 1765005..1765328 (+) | 324 | WP_000783734.1 | phage holin, lambda family | - |
| HUZ91_RS08520 (HUZ91_08475) | - | 1765312..1765788 (+) | 477 | WP_000229396.1 | glycoside hydrolase family protein | - |
| HUZ91_RS08525 (HUZ91_08480) | - | 1765785..1766252 (+) | 468 | WP_021537017.1 | lysis protein | - |
| HUZ91_RS08530 (HUZ91_08485) | - | 1766240..1766392 (+) | 153 | WP_001139682.1 | hypothetical protein | - |
| HUZ91_RS08535 (HUZ91_08490) | - | 1766472..1766759 (+) | 288 | WP_000343115.1 | hypothetical protein | - |
| HUZ91_RS08540 (HUZ91_08495) | - | 1767054..1767296 (+) | 243 | WP_000807788.1 | DUF2560 family protein | - |
| HUZ91_RS08545 (HUZ91_08500) | - | 1767372..1767608 (-) | 237 | WP_001673925.1 | hypothetical protein | - |
| HUZ91_RS08550 (HUZ91_08505) | - | 1767656..1767838 (-) | 183 | WP_001601998.1 | DUF2158 domain-containing protein | - |
| HUZ91_RS08555 (HUZ91_08510) | - | 1767865..1768392 (+) | 528 | WP_089602606.1 | terminase small subunit | - |
| HUZ91_RS08560 (HUZ91_08515) | - | 1768389..1769804 (+) | 1416 | WP_089602607.1 | PBSX family phage terminase large subunit | - |
| HUZ91_RS08565 (HUZ91_08520) | - | 1769806..1772004 (+) | 2199 | WP_239606150.1 | portal protein | - |
| HUZ91_RS08570 (HUZ91_08525) | - | 1772095..1772988 (+) | 894 | WP_085455941.1 | scaffolding protein | - |
| HUZ91_RS08575 (HUZ91_08530) | - | 1773007..1774260 (+) | 1254 | WP_001462595.1 | P22 phage major capsid protein family protein | - |
| HUZ91_RS08580 (HUZ91_08535) | - | 1774302..1774490 (+) | 189 | WP_001462613.1 | hypothetical protein | - |
| HUZ91_RS08585 (HUZ91_08540) | - | 1774471..1774932 (+) | 462 | WP_001140510.1 | packaged DNA stabilization gp4 family protein | - |
| HUZ91_RS08590 (HUZ91_08545) | - | 1774942..1776360 (+) | 1419 | WP_001576812.1 | packaged DNA stabilization protein gp10 | - |
| HUZ91_RS08595 (HUZ91_08550) | - | 1776360..1777313 (+) | 954 | WP_105075739.1 | tail needle knob protein | - |
| HUZ91_RS08600 (HUZ91_08555) | - | 1777313..1777768 (+) | 456 | WP_000614031.1 | DUF2824 family protein | - |
| HUZ91_RS08605 (HUZ91_08560) | - | 1777771..1778463 (+) | 693 | WP_239606152.1 | DNA transfer protein | - |
| HUZ91_RS08610 (HUZ91_08565) | - | 1778473..1779804 (+) | 1332 | WP_239606154.1 | phage DNA ejection protein | - |
| HUZ91_RS08615 (HUZ91_08570) | - | 1779805..1782198 (+) | 2394 | WP_239606156.1 | lytic transglycosylase domain-containing protein | - |
| HUZ91_RS08620 (HUZ91_08575) | - | 1782288..1782547 (-) | 260 | Protein_1692 | Arc family DNA-binding protein | - |
| HUZ91_RS08625 (HUZ91_08580) | - | 1782681..1784963 (+) | 2283 | WP_239606158.1 | phage tailspike protein | - |
| HUZ91_RS08630 (HUZ91_08585) | - | 1784999..1786264 (-) | 1266 | WP_239606166.1 | hypothetical protein | - |
| HUZ91_RS08635 (HUZ91_08590) | - | 1786402..1787712 (+) | 1311 | WP_239606169.1 | right-handed parallel beta-helix repeat-containing protein | - |
| HUZ91_RS08640 (HUZ91_08595) | - | 1787819..1788058 (+) | 240 | WP_000555017.1 | hypothetical protein | - |
| HUZ91_RS08645 (HUZ91_08600) | - | 1788058..1788375 (+) | 318 | WP_000506723.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18731.03 Da Isoelectric Point: 8.4877
>NTDB_id=456101 HUZ91_RS08385 WP_000168274.1 1753111..1753617(-) (ssb) [Shigella flexneri strain SWHIN_97]
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
Nucleotide
Download Length: 507 bp
>NTDB_id=456101 HUZ91_RS08385 WP_000168274.1 1753111..1753617(-) (ssb) [Shigella flexneri strain SWHIN_97]
ATGGCAAGCAGAGGCGTAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAGATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
ATGGCAAGCAGAGGCGTAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAGATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
62.147 |
100 |
0.655 |
| ssb | Glaesserella parasuis strain SC1401 |
45.856 |
100 |
0.494 |
| ssb | Neisseria meningitidis MC58 |
38.636 |
100 |
0.405 |
| ssb | Neisseria gonorrhoeae MS11 |
38.636 |
100 |
0.405 |