Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUZ65_RS03070 Genome accession   NZ_CP055063
Coordinates   690529..691065 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Shigella dysenteriae strain SWHE2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 667054..700327 690529..691065 within 0


Gene organization within MGE regions


Location: 667054..700327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ65_RS02960 (HUZ65_02935) - 667054..668634 (+) 1581 WP_023308567.1 SopA family protein -
  HUZ65_RS02965 (HUZ65_02940) ubiC 668857..669354 (+) 498 WP_001297295.1 chorismate lyase -
  HUZ65_RS02970 (HUZ65_02945) ubiA 669367..670239 (+) 873 WP_000455227.1 4-hydroxybenzoate octaprenyltransferase -
  HUZ65_RS02975 (HUZ65_02950) plsB 670394..672817 (-) 2424 WP_000017354.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  HUZ65_RS02980 (HUZ65_02955) dgkA 672988..673356 (+) 369 WP_000002907.1 diacylglycerol kinase -
  HUZ65_RS02985 (HUZ65_02960) lexA 673466..674074 (+) 609 WP_000646078.1 transcriptional repressor LexA -
  HUZ65_RS02990 (HUZ65_02965) dinF 674147..675472 (+) 1326 WP_023308568.1 MATE family efflux transporter DinF -
  HUZ65_RS02995 (HUZ65_02970) - 675588..675797 (+) 210 WP_001030593.1 CsbD family protein -
  HUZ65_RS03000 (HUZ65_02975) zur 675839..676354 (-) 516 WP_001295691.1 zinc uptake transcriptional repressor Zur -
  HUZ65_RS03005 (HUZ65_02980) - 676673..677695 (+) 1023 WP_239612628.1 DUF2713 family protein -
  HUZ65_RS03010 (HUZ65_02985) dusA 678056..679093 (+) 1038 WP_001362079.1 tRNA dihydrouridine(20/20a) synthase DusA -
  HUZ65_RS03015 (HUZ65_02990) pspG 679227..679469 (+) 243 WP_000891409.1 envelope stress response protein PspG -
  HUZ65_RS03020 (HUZ65_02995) - 679635..680618 (-) 984 WP_000235522.1 quinone oxidoreductase -
  HUZ65_RS03025 (HUZ65_03000) dnaB 680701..682116 (+) 1416 WP_000918363.1 replicative DNA helicase -
  HUZ65_RS03030 (HUZ65_03005) alr 682169..683248 (+) 1080 WP_001147332.1 alanine racemase -
  HUZ65_RS03035 (HUZ65_03010) tyrB 683501..684694 (+) 1194 WP_033814904.1 aromatic amino acid transaminase -
  HUZ65_RS03040 (HUZ65_03015) - 684915..685166 (-) 252 WP_216348314.1 hypothetical protein -
  HUZ65_RS03045 (HUZ65_03020) - 685196..685400 (-) 205 Protein_580 hypothetical protein -
  HUZ65_RS03050 (HUZ65_03025) aphA 685817..686530 (+) 714 WP_001226928.1 acid phosphatase AphA -
  HUZ65_RS03055 (HUZ65_03030) - 686641..687057 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HUZ65_RS03060 (HUZ65_03035) - 687061..687417 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HUZ65_RS03065 (HUZ65_03040) uvrA 687452..690274 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HUZ65_RS03070 (HUZ65_03045) ssb 690529..691065 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUZ65_RS03075 (HUZ65_03050) - 691267..691743 (-) 477 WP_001121509.1 hypothetical protein -
  HUZ65_RS03080 (HUZ65_03055) - 692014..692295 (-) 282 WP_001295689.1 YjcB family protein -
  HUZ65_RS03085 (HUZ65_03060) pdeC 692724..694310 (+) 1587 WP_033814906.1 c-di-GMP phosphodiesterase PdeC -
  HUZ65_RS03090 (HUZ65_03065) soxS 694313..694636 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HUZ65_RS03095 (HUZ65_03070) soxR 694722..695186 (+) 465 WP_000412435.1 redox-sensitive transcriptional activator SoxR -
  HUZ65_RS03100 (HUZ65_03075) ghxP 695732..697081 (+) 1350 WP_000106882.1 guanine/hypoxanthine transporter GhxP -
  HUZ65_RS03105 (HUZ65_03080) - 697232..698881 (+) 1650 WP_000402207.1 Na+/H+ antiporter -
  HUZ65_RS03110 (HUZ65_03085) espX5 699035..700327 (-) 1293 WP_033814907.1 T3SS effector pentapeptide repeat protein EspX5 -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=456051 HUZ65_RS03070 WP_000168305.1 690529..691065(+) (ssb) [Shigella dysenteriae strain SWHE2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=456051 HUZ65_RS03070 WP_000168305.1 690529..691065(+) (ssb) [Shigella dysenteriae strain SWHE2]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCTGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGCGGTCAGCCGCAGG
GTGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489