Detailed information NTG0455976

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: JG534_RS06965
• Genome accession: NZ_CP066745
• Coordinates: 1352246..1353253 (+)
• Length: 335 a.a.
• NCBI ID: WP_002868464.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1347246..1358253

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JG534_RS08925	-	1348905..1349855 (-)	951	WP_032598152.1	autotransporter outer membrane beta-barrel domain-containing protein	-
JG534_RS08930	-	1350045..1350572 (-)	528	WP_002888089.1	hypothetical protein	-
JG534_RS08935	-	1350725..1351183 (-)	459	WP_052773886.1	hypothetical protein	-
JG534_RS06960 (JG534_06960)	-	1351745..1352155 (-)	411	WP_002783915.1	hypothetical protein	-
JG534_RS06965 (JG534_06965)	ruvB	1352246..1353253 (+)	1008	WP_002868464.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
JG534_RS06970 (JG534_06970)	amaA	1353257..1354300 (+)	1044	WP_002859651.1	AI-2E family transporter	-
JG534_RS06975 (JG534_06975)	fumC	1354330..1355721 (-)	1392	WP_002868465.1	class II fumarate hydratase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37311.85 Da
• Isoelectric Point: 4.9081

>NTDB_id=455976 JG534_RS06965 WP_002868464.1 1352246..1353253(+) (ruvB) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANSYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide

• Length: 1008 bp

>NTDB_id=455976 JG534_RS06965 WP_002868464.1 1352246..1353253(+) (ruvB) [Campylobacter jejuni strain CJP19-D996 isolate CFSAN091032]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATGTCTTTATAGCTGCAGCTAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGCGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACTAATCTTAGCGAAGGGGATATACT
TTTTATCGATGAAATTCACCGCTTAAGCCCTGCTATCGAAGAAGTACTTTATCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGCCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACTCGT
GCAGGTATGCTTAGCAATCCTTTGCGCGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTAATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACCCCTAGAATAGCTCTAAGGCTTTTAAAAAGGGTAAGAGATTTTGCCGATGTTAATGATGAAGAAATTATCACA
GAAAAAAGAGCTAATGAGGCCTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCTAAGCAAAAACCTATCGGACTTGCAAGCATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTATTAGCTAATAGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGC
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (255-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	68.862	99.701	0.687
ruvB	Bacillus subtilis subsp. subtilis str. 168	52.761	97.313	0.513
ruvB	Streptococcus pneumoniae TIGR4	48.024	98.209	0.472
ruvB	Streptococcus pneumoniae R6	48.024	98.209	0.472
ruvB	Streptococcus pneumoniae D39	48.024	98.209	0.472
ruvB	Synechocystis sp. PCC 6803	48.91	95.821	0.469