Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUZ70_RS13060 Genome accession   NZ_CP055048
Coordinates   2712979..2713515 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain SWHEFF_58     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2707979..2718515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ70_RS13040 (HUZ70_12955) soxR 2709707..2710171 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  HUZ70_RS13045 (HUZ70_12960) soxS 2710257..2710580 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HUZ70_RS13050 (HUZ70_12965) pdeC 2710583..2712169 (-) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  HUZ70_RS13055 (HUZ70_12970) yjcB 2712599..2712880 (+) 282 WP_001295689.1 YjcB family protein -
  HUZ70_RS13060 (HUZ70_12975) ssb 2712979..2713515 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUZ70_RS13065 (HUZ70_12980) uvrA 2713770..2716592 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HUZ70_RS13070 (HUZ70_12985) yjbR 2716627..2716983 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HUZ70_RS13075 (HUZ70_12990) yjbQ 2716987..2717403 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HUZ70_RS13080 (HUZ70_12995) aphA 2717514..2718227 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=455937 HUZ70_RS13060 WP_000168305.1 2712979..2713515(-) (ssb) [Escherichia coli strain SWHEFF_58]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=455937 HUZ70_RS13060 WP_000168305.1 2712979..2713515(-) (ssb) [Escherichia coli strain SWHEFF_58]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACTGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGCCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489