Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | G148_RS00720 | Genome accession | NC_020125 |
| Coordinates | 141874..142896 (+) | Length | 340 a.a. |
| NCBI ID | WP_004916525.1 | Uniprot ID | - |
| Organism | Riemerella anatipestifer RA-CH-2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 136874..147896
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G148_RS00690 (G148_0129) | - | 137311..138462 (+) | 1152 | WP_004916539.1 | aldo/keto reductase | - |
| G148_RS00695 (G148_0130) | - | 138475..139239 (+) | 765 | WP_004916537.1 | enoyl-CoA hydratase/isomerase family protein | - |
| G148_RS00700 (G148_0131) | - | 139265..139696 (+) | 432 | WP_013447090.1 | deoxycytidylate deaminase | - |
| G148_RS00705 (G148_0132) | xerD | 139697..140608 (+) | 912 | WP_013447089.1 | site-specific tyrosine recombinase XerD | - |
| G148_RS00710 (G148_0133) | - | 140613..141125 (+) | 513 | WP_004916529.1 | NUDIX hydrolase | - |
| G148_RS00715 (G148_0134) | - | 141204..141710 (+) | 507 | WP_004916526.1 | ferritin | - |
| G148_RS00720 (G148_0135) | ruvB | 141874..142896 (+) | 1023 | WP_004916525.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| G148_RS00725 (G148_0136) | - | 142933..143799 (+) | 867 | WP_004916523.1 | MBL fold metallo-hydrolase | - |
| G148_RS00730 (G148_0137) | coaE | 143815..144405 (+) | 591 | WP_004916520.1 | dephospho-CoA kinase | - |
| G148_RS00735 (G148_0138) | - | 144418..145407 (+) | 990 | WP_004916518.1 | cation diffusion facilitator family transporter | - |
| G148_RS00740 (G148_0139) | uvrC | 145427..147217 (+) | 1791 | WP_015345294.1 | excinuclease ABC subunit UvrC | Machinery gene |
| G148_RS00745 (G148_0140) | - | 147207..147617 (-) | 411 | WP_004916514.1 | VanZ family protein | - |
Sequence
Protein
Download Length: 340 a.a. Molecular weight: 38002.65 Da Isoelectric Point: 5.0754
>NTDB_id=45580 G148_RS00720 WP_004916525.1 141874..142896(+) (ruvB) [Riemerella anatipestifer RA-CH-2]
MPDFLHPDKENYSAEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELG
VGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETGPNARSVQINLNPFTLVGA
TTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGVPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNG
EIEIKITKFALDSLNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREV
TDKAYQHLNISRAKNMGELF
MPDFLHPDKENYSAEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELG
VGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETGPNARSVQINLNPFTLVGA
TTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGVPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNG
EIEIKITKFALDSLNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREV
TDKAYQHLNISRAKNMGELF
Nucleotide
Download Length: 1023 bp
>NTDB_id=45580 G148_RS00720 WP_004916525.1 141874..142896(+) (ruvB) [Riemerella anatipestifer RA-CH-2]
ATGCCAGACTTCTTACATCCAGATAAAGAAAATTATTCAGCCGAAGAGCTTTTATTAGAAGAGCAAATACGCCCTCAATC
ATTCAAAGATTTTGCGGGGCAAAGGCGTACTTTGGATAATTTAGAAGTCTTTGTAGCAGCTGCCAAAAAACGAGGTTCTG
CACTAGACCACACACTTTTGCATGGTCCTCCAGGGTTAGGGAAAACCACTCTAGCCCACATTATTGCTAATGAATTGGGC
GTGGGTTTTAAAGTAACCTCTGGTCCTGTTTTAGACAAACCTGGAAGTTTGGCAGGACTCCTTACCAACTTAGAAGAAAA
CGATGTTCTTTTCATAGACGAAATACACCGTTTATCTCCCGTAGTAGAAGAGTACCTCTATTCCGCTATGGAAGACTACA
AGATAGATATTATGCTAGAAACAGGTCCTAATGCTCGTTCAGTACAAATCAATCTTAATCCGTTTACGTTGGTTGGAGCT
ACTACAAGAAGTGGTATGCTTACCAAACCAATGCTAGCGAGATTCGGTATACAATCTAGATTAGAGTACTACACAGTAGA
ACTTTTAGGTATGATTATCGAAAGAAGTGCTAGAGTGCTTGGCGTTCCTATTTATGAAGATGCTGCACTAGAGATAGCTA
GAAGAAGCCGAGGTACTCCTAGAATTGCTAACGCTCTACTTCGCCGTGTGCGAGATTTTGCAGAAATAAAAGGCAATGGC
GAGATAGAAATAAAGATAACCAAATTCGCACTAGATTCTCTCAATGTAGATGAGTTTGGTCTTGATGATATGGACAACAA
AATTATGAGGGTGATGATAGAAAACTTCAAAGGGAAACCTGTGGGGATTTCTGCATTGGCGACTTCCATCGGAGAAAATC
CAGAGACTTTGGAAGAAGTTTATGAGCCTTTTTTAATTCAAGAAGGATTCATCATCAGAACACCAAGAGGTCGAGAAGTT
ACCGATAAGGCTTACCAACACCTTAACATCAGTAGAGCTAAAAATATGGGAGAGCTTTTCTAA
ATGCCAGACTTCTTACATCCAGATAAAGAAAATTATTCAGCCGAAGAGCTTTTATTAGAAGAGCAAATACGCCCTCAATC
ATTCAAAGATTTTGCGGGGCAAAGGCGTACTTTGGATAATTTAGAAGTCTTTGTAGCAGCTGCCAAAAAACGAGGTTCTG
CACTAGACCACACACTTTTGCATGGTCCTCCAGGGTTAGGGAAAACCACTCTAGCCCACATTATTGCTAATGAATTGGGC
GTGGGTTTTAAAGTAACCTCTGGTCCTGTTTTAGACAAACCTGGAAGTTTGGCAGGACTCCTTACCAACTTAGAAGAAAA
CGATGTTCTTTTCATAGACGAAATACACCGTTTATCTCCCGTAGTAGAAGAGTACCTCTATTCCGCTATGGAAGACTACA
AGATAGATATTATGCTAGAAACAGGTCCTAATGCTCGTTCAGTACAAATCAATCTTAATCCGTTTACGTTGGTTGGAGCT
ACTACAAGAAGTGGTATGCTTACCAAACCAATGCTAGCGAGATTCGGTATACAATCTAGATTAGAGTACTACACAGTAGA
ACTTTTAGGTATGATTATCGAAAGAAGTGCTAGAGTGCTTGGCGTTCCTATTTATGAAGATGCTGCACTAGAGATAGCTA
GAAGAAGCCGAGGTACTCCTAGAATTGCTAACGCTCTACTTCGCCGTGTGCGAGATTTTGCAGAAATAAAAGGCAATGGC
GAGATAGAAATAAAGATAACCAAATTCGCACTAGATTCTCTCAATGTAGATGAGTTTGGTCTTGATGATATGGACAACAA
AATTATGAGGGTGATGATAGAAAACTTCAAAGGGAAACCTGTGGGGATTTCTGCATTGGCGACTTCCATCGGAGAAAATC
CAGAGACTTTGGAAGAAGTTTATGAGCCTTTTTTAATTCAAGAAGGATTCATCATCAGAACACCAAGAGGTCGAGAAGTT
ACCGATAAGGCTTACCAACACCTTAACATCAGTAGAGCTAAAAATATGGGAGAGCTTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Streptococcus pneumoniae TIGR4 |
57.143 |
92.647 |
0.529 |
| ruvB | Streptococcus pneumoniae R6 |
57.143 |
92.647 |
0.529 |
| ruvB | Streptococcus pneumoniae D39 |
57.143 |
92.647 |
0.529 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
56.508 |
92.647 |
0.524 |
| ruvB | Synechocystis sp. PCC 6803 |
47.447 |
97.941 |
0.465 |
| ruvB | Helicobacter pylori 26695 |
47.937 |
92.647 |
0.444 |