Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HUZ77_RS21395 | Genome accession | NZ_CP055019 |
| Coordinates | 4474075..4474611 (-) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Escherichia coli strain SWHEFF_69 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4474075..4531412 | 4474075..4474611 | within | 0 |
Gene organization within MGE regions
Location: 4474075..4531412
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ77_RS21395 (HUZ77_21230) | ssb | 4474075..4474611 (-) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| HUZ77_RS21400 (HUZ77_21235) | uvrA | 4474866..4477688 (+) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| HUZ77_RS21405 (HUZ77_21240) | yjbR | 4477723..4478079 (-) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| HUZ77_RS21410 (HUZ77_21245) | yjbQ | 4478083..4478499 (-) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| HUZ77_RS21415 (HUZ77_21250) | aphA | 4478610..4479323 (-) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| HUZ77_RS21420 | - | 4479724..4479946 (+) | 223 | Protein_4211 | hypothetical protein | - |
| HUZ77_RS21425 (HUZ77_21260) | tyrB | 4480450..4481643 (-) | 1194 | WP_000486954.1 | aromatic amino acid transaminase | - |
| HUZ77_RS21430 (HUZ77_21265) | alr | 4481896..4482975 (-) | 1080 | WP_001147328.1 | alanine racemase | - |
| HUZ77_RS21435 (HUZ77_21270) | dnaB | 4483028..4484443 (-) | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| HUZ77_RS21440 (HUZ77_21275) | qorA | 4484526..4485509 (+) | 984 | WP_001600849.1 | quinone oxidoreductase | - |
| HUZ77_RS21445 (HUZ77_21280) | pspG | 4485675..4485917 (-) | 243 | WP_000891408.1 | envelope stress response protein PspG | - |
| HUZ77_RS21450 (HUZ77_21285) | dusA | 4486051..4487088 (-) | 1038 | WP_012602639.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| HUZ77_RS21455 (HUZ77_21290) | - | 4487450..4488454 (-) | 1005 | WP_022646425.1 | DUF2713 family protein | - |
| HUZ77_RS21460 (HUZ77_21295) | zur | 4488772..4489287 (+) | 516 | WP_061092769.1 | zinc uptake transcriptional repressor Zur | - |
| HUZ77_RS21465 (HUZ77_21300) | yjbJ | 4489329..4489538 (-) | 210 | WP_001296638.1 | CsbD family protein | - |
| HUZ77_RS21470 (HUZ77_21305) | dinF | 4489654..4490979 (-) | 1326 | WP_001562441.1 | MATE family efflux transporter DinF | - |
| HUZ77_RS21475 (HUZ77_21310) | lexA | 4491052..4491660 (-) | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| HUZ77_RS21480 (HUZ77_21315) | dgkA | 4491770..4492138 (-) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| HUZ77_RS21485 (HUZ77_21320) | plsB | 4492309..4494732 (+) | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| HUZ77_RS21490 (HUZ77_21325) | ubiA | 4494887..4495759 (-) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| HUZ77_RS21495 (HUZ77_21330) | ubiC | 4495772..4496269 (-) | 498 | WP_001308201.1 | chorismate lyase | - |
| HUZ77_RS21500 (HUZ77_21335) | - | 4496492..4498072 (-) | 1581 | WP_061092770.1 | SopA family protein | - |
| HUZ77_RS21505 (HUZ77_21340) | malM | 4498300..4499220 (-) | 921 | WP_001361468.1 | maltose operon protein MalM | - |
| HUZ77_RS21510 (HUZ77_21345) | lamB | 4499463..4500803 (-) | 1341 | WP_000973665.1 | maltoporin LamB | - |
| HUZ77_RS21515 (HUZ77_21350) | malK | 4500875..4501990 (-) | 1116 | WP_000179165.1 | maltose/maltodextrin ABC transporter ATP-binding protein MalK | - |
| HUZ77_RS21520 (HUZ77_21355) | malE | 4502355..4503545 (+) | 1191 | WP_000695387.1 | maltose/maltodextrin ABC transporter substrate-binding protein MalE | - |
| HUZ77_RS21525 (HUZ77_21360) | malF | 4503699..4505243 (+) | 1545 | WP_001361466.1 | maltose ABC transporter permease MalF | - |
| HUZ77_RS21530 (HUZ77_21365) | malG | 4505258..4506148 (+) | 891 | WP_001252058.1 | maltose ABC transporter permease MalG | - |
| HUZ77_RS21535 (HUZ77_21370) | psiE | 4506242..4506652 (-) | 411 | WP_000202902.1 | phosphate-starvation-inducible protein PsiE | - |
| HUZ77_RS21540 (HUZ77_21375) | - | 4506867..4507145 (+) | 279 | WP_001328330.1 | hypothetical protein | - |
| HUZ77_RS21545 (HUZ77_21380) | yjbH | 4507192..4509288 (-) | 2097 | WP_000745730.1 | YjbH domain-containing protein | - |
| HUZ77_RS21550 (HUZ77_21385) | yjbG | 4509288..4510025 (-) | 738 | WP_000595548.1 | capsule biosynthesis GfcC family protein | - |
| HUZ77_RS21555 (HUZ77_21390) | yjbF | 4510022..4510660 (-) | 639 | WP_001361463.1 | YjbF family lipoprotein | - |
| HUZ77_RS21560 (HUZ77_21395) | yjbE | 4510774..4511016 (-) | 243 | WP_000757333.1 | exopolysaccharide production protein YjbE | - |
| HUZ77_RS21565 (HUZ77_21400) | pgi | 4511370..4513019 (-) | 1650 | WP_000789981.1 | glucose-6-phosphate isomerase | - |
| HUZ77_RS21570 (HUZ77_21405) | lysC | 4513544..4514893 (+) | 1350 | WP_001290321.1 | lysine-sensitive aspartokinase 3 | - |
| HUZ77_RS21575 (HUZ77_21410) | - | 4514948..4515295 (-) | 348 | WP_000619864.1 | Mor transcription activator family protein | - |
| HUZ77_RS21580 (HUZ77_21415) | - | 4515833..4516120 (+) | 288 | WP_000758131.1 | putative holin | - |
| HUZ77_RS21585 (HUZ77_21420) | - | 4516123..4516728 (+) | 606 | WP_000266448.1 | lytic transglycosylase domain-containing protein | - |
| HUZ77_RS21590 (HUZ77_21425) | - | 4516741..4517055 (+) | 315 | WP_000777272.1 | membrane protein | - |
| HUZ77_RS21595 (HUZ77_21430) | - | 4517200..4517655 (+) | 456 | WP_000404767.1 | Gp37 family protein | - |
| HUZ77_RS21600 (HUZ77_21435) | - | 4517652..4517849 (+) | 198 | WP_000875310.1 | hypothetical protein | - |
| HUZ77_RS21605 (HUZ77_21440) | - | 4517839..4519263 (+) | 1425 | WP_000729835.1 | phage tail sheath family protein | - |
| HUZ77_RS21610 (HUZ77_21445) | - | 4519263..4519787 (+) | 525 | WP_000907502.1 | phage major tail tube protein | - |
| HUZ77_RS21615 (HUZ77_21450) | - | 4519838..4520155 (+) | 318 | WP_000658214.1 | phage tail assembly protein | - |
| HUZ77_RS24595 (HUZ77_21455) | - | 4520115..4520243 (+) | 129 | WP_015674804.1 | GpE family phage tail protein | - |
| HUZ77_RS21620 (HUZ77_21460) | - | 4520345..4522720 (+) | 2376 | WP_001262479.1 | phage tail tape measure protein | - |
| HUZ77_RS21625 (HUZ77_21465) | - | 4522720..4523673 (+) | 954 | WP_000271436.1 | phage tail protein | - |
| HUZ77_RS21630 (HUZ77_21470) | - | 4523673..4523882 (+) | 210 | WP_001269711.1 | tail protein X | - |
| HUZ77_RS21635 (HUZ77_21475) | - | 4523870..4524910 (+) | 1041 | WP_001361462.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| HUZ77_RS21640 (HUZ77_21480) | - | 4524920..4525621 (+) | 702 | WP_000679401.1 | phage baseplate assembly protein V | - |
| HUZ77_RS21645 (HUZ77_21485) | - | 4525720..4526079 (+) | 360 | WP_001093498.1 | GPW/gp25 family protein | - |
| HUZ77_RS21650 (HUZ77_21490) | - | 4526070..4527185 (+) | 1116 | WP_000951744.1 | baseplate J/gp47 family protein | - |
| HUZ77_RS21655 (HUZ77_21495) | - | 4527178..4527894 (+) | 717 | WP_000359520.1 | phage tail protein I | - |
| HUZ77_RS21660 (HUZ77_21500) | - | 4527897..4529477 (+) | 1581 | WP_000135569.1 | phage tail protein | - |
| HUZ77_RS21665 (HUZ77_21505) | - | 4529474..4530181 (+) | 708 | WP_061092771.1 | DUF4376 domain-containing protein | - |
| HUZ77_RS21670 (HUZ77_21510) | - | 4530178..4530633 (+) | 456 | WP_061092772.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=455791 HUZ77_RS21395 WP_000168305.1 4474075..4474611(-) (ssb) [Escherichia coli strain SWHEFF_69]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=455791 HUZ77_RS21395 WP_000168305.1 4474075..4474611(-) (ssb) [Escherichia coli strain SWHEFF_69]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |