Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUZ79_RS24535 Genome accession   NZ_CP055010
Coordinates   5011315..5011839 (-) Length   174 a.a.
NCBI ID   WP_004151744.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain SWHEFF_72     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5006315..5016839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUZ79_RS24525 (HUZ79_24485) - 5006766..5009024 (-) 2259 WP_043519224.1 TonB-dependent siderophore receptor -
  HUZ79_RS24530 (HUZ79_24490) - 5009613..5011193 (+) 1581 WP_053810875.1 lytic transglycosylase F -
  HUZ79_RS24535 (HUZ79_24495) ssb 5011315..5011839 (-) 525 WP_004151744.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUZ79_RS24540 (HUZ79_24500) uvrA 5012091..5014916 (+) 2826 WP_004206306.1 excinuclease ABC subunit UvrA -
  HUZ79_RS24545 (HUZ79_24505) - 5014917..5015273 (-) 357 WP_004206305.1 MmcQ/YjbR family DNA-binding protein -
  HUZ79_RS24550 (HUZ79_24510) - 5015277..5015693 (-) 417 WP_004206303.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HUZ79_RS24555 (HUZ79_24515) aphA 5015825..5016538 (-) 714 WP_004206302.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18711.70 Da        Isoelectric Point: 5.2358

>NTDB_id=455747 HUZ79_RS24535 WP_004151744.1 5011315..5011839(-) (ssb) [Klebsiella quasipneumoniae strain SWHEFF_72]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANFTLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQDKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=455747 HUZ79_RS24535 WP_004151744.1 5011315..5011839(-) (ssb) [Klebsiella quasipneumoniae strain SWHEFF_72]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGGCAGGACCCGGAAGTACGCTACATGCCAAGTGG
CGGCGCAGTCGCCAACTTCACGCTGGCAACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCTGAAGTCGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTGTACATT
GAAGGCCAACTGCGTACCCGCAAGTGGACCGATCAATCCGGTCAGGACAAATACACCACTGAAGTGGTGGTAAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGCGGCGGACAGCAGCAGGGCGGTTGGGGTC
AGCCTCAACAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGGCTCCGGCAGCGCCT
TCCAACGAACCGCCGATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75

100

0.776
  ssb Glaesserella parasuis strain SC1401

59.239

100

0.626
  ssb Neisseria meningitidis MC58

48.603

100

0.5
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.5