Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HUZ60_RS06645 | Genome accession | NZ_CP054977 |
| Coordinates | 1369311..1369784 (-) | Length | 157 a.a. |
| NCBI ID | WP_000168265.1 | Uniprot ID | - |
| Organism | Shigella flexneri strain STIN_92 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1364261..1419789 | 1369311..1369784 | within | 0 |
Gene organization within MGE regions
Location: 1364261..1419789
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ60_RS06595 (HUZ60_06545) | dsdC | 1364261..1365196 (+) | 936 | WP_001300996.1 | DNA-binding transcriptional regulator DsdC | - |
| HUZ60_RS06600 (HUZ60_06550) | torI | 1365380..1365580 (-) | 201 | WP_001163428.1 | response regulator inhibitor TorI | - |
| HUZ60_RS06605 (HUZ60_06555) | - | 1365704..1366048 (-) | 345 | WP_001281193.1 | hypothetical protein | - |
| HUZ60_RS06610 (HUZ60_06560) | - | 1366149..1366328 (-) | 180 | WP_001277767.1 | Eag protein | - |
| HUZ60_RS06615 (HUZ60_06565) | - | 1366425..1367054 (-) | 630 | WP_064770252.1 | dATP/dGTP pyrophosphohydrolase domain-containing protein | - |
| HUZ60_RS06620 (HUZ60_06570) | - | 1367056..1367700 (-) | 645 | WP_059329558.1 | ead/Ea22-like family protein | - |
| HUZ60_RS06625 (HUZ60_06575) | - | 1367697..1368203 (-) | 507 | WP_323135015.1 | ead/Ea22-like family protein | - |
| HUZ60_RS06630 | - | 1368158..1368340 (-) | 183 | WP_069723431.1 | ead/Ea22-like family protein | - |
| HUZ60_RS06635 (HUZ60_06580) | - | 1368337..1368504 (-) | 168 | WP_001214460.1 | DUF2737 family protein | - |
| HUZ60_RS06640 (HUZ60_06585) | - | 1368515..1368808 (-) | 294 | WP_001111278.1 | phage anti-RecBCD protein | - |
| HUZ60_RS06645 (HUZ60_06590) | ssb | 1369311..1369784 (-) | 474 | WP_000168265.1 | single-stranded DNA-binding protein | Machinery gene |
| HUZ60_RS06650 (HUZ60_06595) | - | 1369785..1370492 (-) | 708 | WP_000365280.1 | Rad52/Rad22 family DNA repair protein | - |
| HUZ60_RS06655 (HUZ60_06600) | - | 1370501..1370671 (-) | 171 | WP_016248933.1 | hypothetical protein | - |
| HUZ60_RS06660 (HUZ60_06605) | - | 1370747..1370917 (-) | 171 | WP_001183771.1 | hypothetical protein | - |
| HUZ60_RS06665 (HUZ60_06610) | - | 1371156..1371605 (-) | 450 | WP_072667138.1 | hypothetical protein | - |
| HUZ60_RS06670 (HUZ60_06615) | - | 1371614..1371919 (-) | 306 | WP_105310534.1 | hypothetical protein | - |
| HUZ60_RS06675 (HUZ60_06620) | - | 1372374..1372742 (-) | 369 | WP_106509572.1 | hypothetical protein | - |
| HUZ60_RS06680 (HUZ60_06625) | - | 1372762..1373478 (-) | 717 | WP_000428318.1 | S24 family peptidase | - |
| HUZ60_RS06685 (HUZ60_06630) | - | 1373585..1373779 (+) | 195 | WP_000620665.1 | Cro/CI family transcriptional regulator | - |
| HUZ60_RS06690 (HUZ60_06635) | - | 1373888..1374166 (+) | 279 | WP_001177653.1 | lambda phage CII family protein | - |
| HUZ60_RS06695 (HUZ60_06640) | - | 1374201..1374362 (+) | 162 | WP_000166961.1 | hypothetical protein | - |
| HUZ60_RS06700 (HUZ60_06645) | - | 1374349..1375170 (+) | 822 | WP_105310535.1 | replication protein | - |
| HUZ60_RS06705 (HUZ60_06650) | - | 1375167..1376543 (+) | 1377 | WP_239636712.1 | replicative DNA helicase | - |
| HUZ60_RS06710 (HUZ60_06655) | - | 1376617..1377057 (+) | 441 | WP_000736913.1 | recombination protein NinB | - |
| HUZ60_RS06715 (HUZ60_06660) | - | 1377054..1377236 (+) | 183 | WP_016063117.1 | NinE family protein | - |
| HUZ60_RS06720 (HUZ60_06665) | - | 1377233..1377403 (+) | 171 | WP_021520333.1 | protein NinF | - |
| HUZ60_RS06725 (HUZ60_06670) | - | 1377396..1377905 (+) | 510 | WP_001286130.1 | NUMOD4 motif-containing HNH endonuclease | - |
| HUZ60_RS06730 | - | 1377898..1378173 (+) | 276 | WP_105310537.1 | hypothetical protein | - |
| HUZ60_RS06735 (HUZ60_06675) | - | 1378170..1378532 (+) | 363 | WP_001008199.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HUZ60_RS06740 (HUZ60_06680) | - | 1378529..1378717 (+) | 189 | WP_000994516.1 | protein ninH | - |
| HUZ60_RS06745 (HUZ60_06685) | - | 1378714..1379337 (+) | 624 | WP_079917327.1 | antitermination protein | - |
| HUZ60_RS06750 (HUZ60_06690) | - | 1379771..1380094 (+) | 324 | WP_015980128.1 | phage holin, lambda family | - |
| HUZ60_RS06755 (HUZ60_06695) | - | 1380078..1380554 (+) | 477 | WP_021521977.1 | glycoside hydrolase family protein | - |
| HUZ60_RS06760 (HUZ60_06700) | - | 1380551..1381018 (+) | 468 | WP_057077877.1 | lysis protein | - |
| HUZ60_RS06765 (HUZ60_06705) | - | 1381076..1381648 (+) | 573 | WP_171785568.1 | terminase small subunit | - |
| HUZ60_RS06770 (HUZ60_06710) | - | 1381651..1383273 (+) | 1623 | WP_023565726.1 | hypothetical protein | - |
| HUZ60_RS06775 (HUZ60_06715) | - | 1383273..1384739 (+) | 1467 | WP_106509573.1 | DUF1073 domain-containing protein | - |
| HUZ60_RS06780 (HUZ60_06720) | - | 1384756..1385364 (+) | 609 | WP_000339323.1 | phage minor head protein | - |
| HUZ60_RS06785 (HUZ60_06725) | - | 1385379..1386599 (+) | 1221 | WP_086353605.1 | DUF2213 domain-containing protein | - |
| HUZ60_RS06790 (HUZ60_06730) | - | 1386603..1387109 (+) | 507 | WP_057077880.1 | hypothetical protein | - |
| HUZ60_RS06795 (HUZ60_06735) | - | 1387121..1388062 (+) | 942 | WP_219384105.1 | major capsid family protein | - |
| HUZ60_RS06800 (HUZ60_06740) | - | 1388104..1388493 (+) | 390 | WP_032238373.1 | hypothetical protein | - |
| HUZ60_RS06805 (HUZ60_06745) | - | 1388459..1388866 (+) | 408 | WP_032238372.1 | DUF4054 domain-containing protein | - |
| HUZ60_RS06810 (HUZ60_06750) | - | 1388863..1389417 (+) | 555 | WP_219384104.1 | hypothetical protein | - |
| HUZ60_RS06815 (HUZ60_06755) | - | 1389404..1389793 (+) | 390 | WP_001142482.1 | hypothetical protein | - |
| HUZ60_RS06820 (HUZ60_06760) | - | 1389768..1390331 (+) | 564 | WP_033544654.1 | hypothetical protein | - |
| HUZ60_RS06825 (HUZ60_06765) | - | 1390335..1391480 (+) | 1146 | WP_096988381.1 | DUF3383 family protein | - |
| HUZ60_RS06830 (HUZ60_06770) | - | 1391491..1391931 (+) | 441 | WP_000109249.1 | DUF3277 family protein | - |
| HUZ60_RS06835 (HUZ60_06775) | - | 1391935..1392387 (+) | 453 | WP_105310541.1 | phage tail assembly chaperone | - |
| HUZ60_RS06840 | - | 1392399..1392575 (+) | 177 | WP_023141050.1 | hypothetical protein | - |
| HUZ60_RS06845 (HUZ60_06780) | - | 1392565..1394553 (+) | 1989 | WP_105310542.1 | lytic transglycosylase | - |
| HUZ60_RS06850 (HUZ60_06785) | - | 1394553..1395140 (+) | 588 | WP_057077883.1 | phage baseplate protein | - |
| HUZ60_RS06855 (HUZ60_06790) | - | 1395140..1395442 (+) | 303 | WP_021568411.1 | hypothetical protein | - |
| HUZ60_RS06860 (HUZ60_06795) | - | 1395445..1396509 (+) | 1065 | WP_057077884.1 | hypothetical protein | - |
| HUZ60_RS06865 (HUZ60_06800) | - | 1396509..1396841 (+) | 333 | WP_040063285.1 | hypothetical protein | - |
| HUZ60_RS06870 (HUZ60_06805) | - | 1396895..1397134 (+) | 240 | WP_000466689.1 | DUF4282 domain-containing protein | - |
| HUZ60_RS06875 (HUZ60_06810) | - | 1397194..1397949 (+) | 756 | WP_057077885.1 | Gp138 family membrane-puncturing spike protein | - |
| HUZ60_RS06880 (HUZ60_06815) | - | 1397949..1398302 (+) | 354 | WP_001270634.1 | hypothetical protein | - |
| HUZ60_RS06885 (HUZ60_06820) | - | 1398302..1399498 (+) | 1197 | WP_057077886.1 | baseplate J/gp47 family protein | - |
| HUZ60_RS06890 (HUZ60_06825) | - | 1399495..1400268 (+) | 774 | WP_106504451.1 | DUF2612 domain-containing protein | - |
| HUZ60_RS06895 (HUZ60_06835) | - | 1400405..1400602 (+) | 198 | WP_016244718.1 | hypothetical protein | - |
| HUZ60_RS06905 | - | 1400661..1402346 (+) | 1686 | WP_219356475.1 | SGNH/GDSL hydrolase family protein | - |
| HUZ60_RS06910 (HUZ60_06845) | - | 1402352..1403155 (+) | 804 | WP_106504450.1 | hypothetical protein | - |
| HUZ60_RS06915 (HUZ60_06850) | - | 1403282..1403521 (+) | 240 | WP_057077890.1 | hypothetical protein | - |
| HUZ60_RS06920 (HUZ60_06855) | - | 1403521..1403838 (+) | 318 | WP_057077891.1 | hypothetical protein | - |
| HUZ60_RS06925 (HUZ60_06860) | - | 1404061..1404285 (-) | 225 | Protein_1353 | tyrosine-type recombinase/integrase | - |
| HUZ60_RS06930 (HUZ60_06865) | - | 1404277..1404765 (+) | 489 | Protein_1354 | DUF2612 domain-containing protein | - |
| HUZ60_RS06935 | - | 1404765..1405664 (+) | 900 | WP_239636755.1 | phage tail protein | - |
| HUZ60_RS06940 (HUZ60_06875) | - | 1405667..1406083 (+) | 417 | WP_086353615.1 | tail fiber assembly protein | - |
| HUZ60_RS06945 (HUZ60_06880) | intS | 1406171..1407328 (-) | 1158 | WP_000958671.1 | prophage integrase IntS | - |
| HUZ60_RS06955 (HUZ60_06890) | - | 1407640..1408572 (-) | 933 | WP_024238820.1 | formate/nitrite transporter family protein | - |
| HUZ60_RS06960 (HUZ60_06895) | mlaA | 1408866..1409621 (+) | 756 | WP_000776768.1 | phospholipid-binding lipoprotein MlaA | - |
| HUZ60_RS06965 (HUZ60_06900) | yfdF | 1409803..1410861 (-) | 1059 | WP_000937786.1 | protein YfdF | - |
| HUZ60_RS06970 (HUZ60_06905) | fadL | 1411227..1412567 (-) | 1341 | WP_001400735.1 | long-chain fatty acid transporter FadL | - |
| HUZ60_RS06975 (HUZ60_06910) | - | 1412939..1413223 (+) | 285 | WP_001296261.1 | YfcZ/YiiS family protein | - |
| HUZ60_RS06980 (HUZ60_06915) | fadI | 1413404..1414714 (+) | 1311 | WP_001530662.1 | acetyl-CoA C-acyltransferase FadI | - |
| HUZ60_RS06985 (HUZ60_06920) | fadJ | 1414714..1416858 (+) | 2145 | WP_001618735.1 | fatty acid oxidation complex subunit alpha FadJ | - |
| HUZ60_RS06990 (HUZ60_06925) | sixA | 1417061..1417546 (+) | 486 | WP_001195819.1 | phosphohistidine phosphatase SixA | - |
| HUZ60_RS06995 (HUZ60_06930) | - | 1418227..1418790 (+) | 564 | WP_000033316.1 | fimbrial protein | - |
| HUZ60_RS07000 (HUZ60_06935) | - | 1418872..1419081 (+) | 210 | WP_063097536.1 | FimD/PapC N-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 17618.48 Da Isoelectric Point: 7.3192
>NTDB_id=455558 HUZ60_RS06645 WP_000168265.1 1369311..1369784(-) (ssb) [Shigella flexneri strain STIN_92]
MASRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQMLGGKQGGNEQSSPQRNNGQQQRQQPQQQGNHSEPPMNFDDSDIPF
MASRGVNKVIIIGRLGHDPEIRYSPSGTAFANLTVATSEQWRDKQTGEQKEQTEWHRVVMSGKLAEIASEYLRKGSEVYL
EGKLRTRKWQDQSGQDRFTTEVIVGVGGTMQMLGGKQGGNEQSSPQRNNGQQQRQQPQQQGNHSEPPMNFDDSDIPF
Nucleotide
Download Length: 474 bp
>NTDB_id=455558 HUZ60_RS06645 WP_000168265.1 1369311..1369784(-) (ssb) [Shigella flexneri strain STIN_92]
ATGGCAAGCAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGGCATGATCCAGAAATCAGATATTCACCATCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAATGGCGTGATAAGCAAACTGGAGAGCAAAAGGAGCAGACGG
AGTGGCACCGTGTGGTAATGAGCGGGAAACTGGCAGAAATTGCCAGCGAGTATCTGCGGAAAGGCTCAGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGTGGACAGGATCGGTTCACTACCGAAGTCATCGTGGGCGTTGG
TGGAACCATGCAAATGCTTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAATGGTCAGCAACAAA
GACAGCAACCTCAGCAGCAGGGTAATCACAGCGAACCACCTATGAACTTCGACGATTCGGATATTCCGTTCTAG
ATGGCAAGCAGAGGCGTAAATAAGGTGATCATTATTGGTCGCCTTGGGCATGATCCAGAAATCAGATATTCACCATCAGG
AACGGCATTTGCAAACCTTACAGTTGCTACGTCAGAACAATGGCGTGATAAGCAAACTGGAGAGCAAAAGGAGCAGACGG
AGTGGCACCGTGTGGTAATGAGCGGGAAACTGGCAGAAATTGCCAGCGAGTATCTGCGGAAAGGCTCAGAGGTTTATCTT
GAAGGCAAATTGCGGACAAGAAAATGGCAGGATCAAAGTGGACAGGATCGGTTCACTACCGAAGTCATCGTGGGCGTTGG
TGGAACCATGCAAATGCTTGGTGGCAAGCAAGGAGGCAATGAACAGTCTTCACCTCAGCGAAATAATGGTCAGCAACAAA
GACAGCAACCTCAGCAGCAGGGTAATCACAGCGAACCACCTATGAACTTCGACGATTCGGATATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
59.89 |
100 |
0.694 |
| ssb | Glaesserella parasuis strain SC1401 |
52.198 |
100 |
0.605 |
| ssb | Neisseria meningitidis MC58 |
41.808 |
100 |
0.471 |
| ssb | Neisseria gonorrhoeae MS11 |
40.909 |
100 |
0.459 |