Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HUT07_RS03740 Genome accession   NZ_CP054931
Coordinates   846736..848109 (-) Length   457 a.a.
NCBI ID   WP_176019794.1    Uniprot ID   A0A7H8NMH8
Organism   Stenotrophomonas sp. NA06056     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 841736..853109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT07_RS03720 (HUT07_03720) - 841882..842745 (-) 864 WP_176019790.1 A24 family peptidase -
  HUT07_RS03725 (HUT07_03725) pilC 842753..844012 (-) 1260 WP_176019791.1 type II secretion system F family protein Machinery gene
  HUT07_RS03730 (HUT07_03730) - 844360..844746 (+) 387 WP_176019792.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HUT07_RS03735 (HUT07_03735) pilB 844879..846606 (+) 1728 WP_176019793.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HUT07_RS03740 (HUT07_03740) pilR 846736..848109 (-) 1374 WP_176019794.1 sigma-54 dependent transcriptional regulator Regulator
  HUT07_RS03745 (HUT07_03745) - 848164..849777 (-) 1614 WP_176019795.1 ATP-binding protein -
  HUT07_RS03750 (HUT07_03750) sucC 850155..851324 (+) 1170 WP_025874298.1 ADP-forming succinate--CoA ligase subunit beta -
  HUT07_RS03755 (HUT07_03755) sucD 851346..852221 (+) 876 WP_017356169.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49680.98 Da        Isoelectric Point: 6.6449

>NTDB_id=455389 HUT07_RS03740 WP_176019794.1 846736..848109(-) (pilR) [Stenotrophomonas sp. NA06056]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDITVLRGLVKHALELNNSERPVAGPAAEQAARLLGESPAMDVLRATIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPTELMESEFFGHRKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAPSEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPA
LAASILARLARSHGRSTPLLAPSALDALAQYGFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRSPGSAAHPEAV
VDLHPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=455389 HUT07_RS03740 WP_176019794.1 846736..848109(-) (pilR) [Stenotrophomonas sp. NA06056]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGATATCCGCGAACTGCTGGTGTTGACCCTCGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAGCTGCTGGCCAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCAGTGGAAGCACTGAAAGCCGGTGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCACCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACAGCGAACGCCCGGTTGCCGGGCCCGCTG
CCGAACAGGCCGCGCGCCTGCTGGGTGAATCGCCAGCCATGGACGTGCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTGGGCGAGTCCGGGGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGCGCAAGGTGCACG
CGCCGCCGGGCCGTTCGTGCCGGTGAACTGTGGCGCCATCCCCACCGAATTGATGGAGAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCACCGGCGCTCATGCCGACAAACCAGGACTGTTCCAGGCCGCACACGGCGGCACCCTGTTCCTGGATGAA
GTGGCCGAGCTGCCGTTGCAGATGCAGGTGAAGCTGCTGCGTGCAATCCAGGAGAAGTCGGTGCGTGCGGTGGGCGCGCC
CAGCGAAGAACCGGTGGACGTGCGCATTCTTTCGGCCACCCATAAGGATCTGGCCGAGCTGGTCGAGGACGGTCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTCATTGAGCTGCGTGTGCCGCCGCTGCGCGAGCGCCGTCAGGACCTGCCGGCG
CTGGCCGCGTCGATCCTGGCACGGCTGGCCCGCAGCCATGGCCGCAGCACGCCGCTGCTGGCACCTTCGGCGCTGGACGC
ACTGGCCCAGTATGGGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGCGCACTGGCGCTGGCGGAAGAAG
ACCGCATCGGTGCCGACGACCTGCGCCTGCCGCAGCATGCACCGCGCTCACCGGGCAGTGCGGCCCATCCCGAAGCCGTG
GTCGATCTGCACCCTGGCAGCGCCGCCCTGCCCTCGTACATCGAGCAGCTTGAGCGCAGTGCGATCCAGCGTGCGCTGGA
AGAAAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGCGCGCTGCGTTACAAGCTGAAGAAGC
TGGGAATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8NMH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.596

99.781

0.635
  pilR Acinetobacter baumannii strain A118

47.835

100

0.484