Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BSNT_RS21840 Genome accession   NC_017196
Coordinates   4088660..4089178 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. natto BEST195     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4083660..4094178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSNT_RS21815 (BSNT_06262) - 4083920..4084948 (+) 1029 WP_014481504.1 AAA family ATPase -
  BSNT_RS21820 (BSNT_06263) - 4084926..4086200 (+) 1275 WP_014481505.1 MFS transporter -
  BSNT_RS21825 (BSNT_06265) ccpB 4087120..4087494 (-) 375 Protein_4242 transcriptional regulator CcpB -
  BSNT_RS21830 (BSNT_06267) xth 4087554..4088312 (-) 759 WP_014481508.1 exodeoxyribonuclease III -
  BSNT_RS21835 rpsR 4088377..4088616 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  BSNT_RS21840 (BSNT_06270) ssbA 4088660..4089178 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  BSNT_RS21845 (BSNT_06271) rpsF 4089219..4089506 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  BSNT_RS21850 (BSNT_06272) ychF 4089617..4090717 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  BSNT_RS21855 (BSNT_06274) yyaE 4090844..4092847 (-) 2004 WP_014481509.1 molybdopterin-dependent oxidoreductase -
  BSNT_RS21860 (BSNT_06275) yyzM 4092898..4093104 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=45530 BSNT_RS21840 WP_003219228.1 4088660..4089178(-) (ssbA) [Bacillus subtilis subsp. natto BEST195]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=45530 BSNT_RS21840 WP_003219228.1 4088660..4089178(-) (ssbA) [Bacillus subtilis subsp. natto BEST195]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment