Detailed information NTG0455255

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HUW52_RS06070
• Genome accession: NZ_CP054880
• Coordinates: 1369714..1370586 (-)
• Length: 290 a.a.
• NCBI ID: WP_175553182.1
• Uniprot ID: -
• Organism: Pseudomonas sp. 43A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1364714..1375586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUW52_RS06030 (HUW52_06030)	-	1365065..1366363 (-)	1299	WP_095121769.1	NAD(P)/FAD-dependent oxidoreductase	-
HUW52_RS06035 (HUW52_06035)	-	1366427..1366600 (-)	174	WP_007909875.1	DUF3094 domain-containing protein	-
HUW52_RS06040 (HUW52_06040)	-	1366652..1367179 (-)	528	WP_175553179.1	MOSC domain-containing protein	-
HUW52_RS06045 (HUW52_06045)	-	1367176..1367802 (-)	627	WP_007909887.1	DUF1780 domain-containing protein	-
HUW52_RS06050 (HUW52_06050)	-	1367920..1368609 (+)	690	WP_175553180.1	energy-coupling factor ABC transporter permease	-
HUW52_RS06055 (HUW52_06055)	-	1368675..1368890 (+)	216	WP_008078491.1	hypothetical protein	-
HUW52_RS06060 (HUW52_06060)	yacG	1368897..1369097 (-)	201	WP_007959585.1	DNA gyrase inhibitor YacG	-
HUW52_RS06065 (HUW52_06065)	coaE	1369094..1369717 (-)	624	WP_175553181.1	dephospho-CoA kinase	-
HUW52_RS06070 (HUW52_06070)	pilD	1369714..1370586 (-)	873	WP_175553182.1	A24 family peptidase	Machinery gene
HUW52_RS06075 (HUW52_06075)	pilC	1370588..1371805 (-)	1218	WP_175553183.1	type II secretion system F family protein	Machinery gene
HUW52_RS06080 (HUW52_06080)	pilB	1371808..1373508 (-)	1701	WP_175553184.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HUW52_RS06085 (HUW52_06085)	-	1373735..1374166 (+)	432	WP_175553185.1	pilin	-
HUW52_RS06090 (HUW52_06090)	-	1374464..1374820 (+)	357	WP_016986244.1	BON domain-containing protein	-
HUW52_RS06095 (HUW52_06095)	-	1375106..1375402 (-)	297	WP_016986246.1	DUF2845 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32432.76 Da
• Isoelectric Point: 7.4001

>NTDB_id=455255 HUW52_RS06070 WP_175553182.1 1369714..1370586(-) (pilD) [Pseudomonas sp. 43A]
MLIDELFALYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGETPLPTYNLMLPHSECPHCTHRIR
PWENIPLLSYLWLRGRCSACAAPISKRYPLTELACALLSAFVAWHFGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGLFVSLHDALWGAVAGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVILLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=455255 HUW52_RS06070 WP_175553182.1 1369714..1370586(-) (pilD) [Pseudomonas sp. 43A]
ATGCTTATCGACGAACTGTTTGCCCTGTATCCGCTGGCCTTTGTCTTCACTGCCCTGTTGCTGGGTCTGGTGGTCGGCAG
CTTTCTCAACGTGCTGATCTGGCGTCTGCCGAAAATGCTCGAGCGCGATTGGCGCCAGCAGGCCCACGACGTACTCGGCT
TGCCCGGCGAGACGCCACTGCCGACCTACAACCTGATGCTGCCGCACTCCGAATGCCCGCACTGCACCCACCGGATCCGT
CCGTGGGAAAACATTCCGCTGCTCAGTTATCTGTGGCTGCGGGGGCGCTGTTCCGCGTGCGCTGCACCTATCAGCAAACG
TTATCCGCTGACCGAACTGGCCTGCGCTCTGCTCTCGGCATTCGTGGCCTGGCATTTCGGCTTTGGCTGGCCGGCGTGCC
TGCTGATTGTCCTTACCTGGGGTCTGCTGGCGATGAGTCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGTTGTTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCTTGTTCGTGTCGTTGCACGATGCGCTGTGGGGCGCGGT
GGCCGGTTACCTGGCGCTGTGGTCAGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGCCACGGTGATT
TCAAGCTGTTGGCGCTACTCGGCGCGTGGGGTGGCTGGCAGATTCTGCCACTGACGATTCTGTTGTCATCACTGGTCGGA
GCCATTATCGGGGTGATTTTACTACGCCTGCGCGAACAGAAAACCTCGACACCGATCCCCTTCGGCCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.028	97.241	0.545
pilD	Vibrio campbellii strain DS40M4	53.546	97.241	0.521
pilD	Acinetobacter baumannii D1279779	49.648	97.931	0.486
pilD	Acinetobacter nosocomialis M2	49.648	97.931	0.486
pilD	Neisseria gonorrhoeae MS11	47.778	93.103	0.445