Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUW52_RS04930 Genome accession   NZ_CP054880
Coordinates   1131204..1131728 (+) Length   174 a.a.
NCBI ID   WP_008081898.1    Uniprot ID   J3IML3
Organism   Pseudomonas sp. 43A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1126204..1136728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW52_RS04915 (HUW52_04915) bfr 1126238..1126705 (+) 468 WP_175553089.1 bacterioferritin -
  HUW52_RS04920 (HUW52_04920) uvrA 1126771..1129605 (-) 2835 WP_016983568.1 excinuclease ABC subunit UvrA -
  HUW52_RS04925 (HUW52_04925) - 1129797..1131194 (+) 1398 WP_016983569.1 MFS transporter -
  HUW52_RS04930 (HUW52_04930) ssb 1131204..1131728 (+) 525 WP_008081898.1 single-stranded DNA-binding protein Machinery gene
  HUW52_RS04935 (HUW52_04935) - 1131924..1133081 (-) 1158 WP_016983570.1 glutathionylspermidine synthase family protein -
  HUW52_RS04940 (HUW52_04940) - 1133084..1133788 (-) 705 WP_016983571.1 DUF1190 domain-containing protein -
  HUW52_RS04945 (HUW52_04945) - 1133806..1134231 (-) 426 WP_016983572.1 DUF350 domain-containing protein -
  HUW52_RS04950 (HUW52_04950) - 1134247..1134897 (-) 651 WP_034155940.1 DUF2491 family protein -
  HUW52_RS04955 (HUW52_04955) - 1135097..1135795 (-) 699 WP_175553090.1 PspA/IM30 family protein -
  HUW52_RS04960 (HUW52_04960) - 1135813..1136394 (-) 582 WP_253756885.1 YjfI family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19242.39 Da        Isoelectric Point: 5.9314

>NTDB_id=455251 HUW52_RS04930 WP_008081898.1 1131204..1131728(+) (ssb) [Pseudomonas sp. 43A]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQRSAPAPQQAAPQ
PAPDFDSFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=455251 HUW52_RS04930 WP_008081898.1 1131204..1131728(+) (ssb) [Pseudomonas sp. 43A]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTTGGCAAGGTTGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCGCCACGTCCGCAGCAGTCGGCTCCCCAGCAGCGTTCGGCCCCGGCTCCACAGCAGGCCGCACCGCAA
CCGGCTCCGGATTTCGACAGCTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J3IML3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.011

100

0.603
  ssb Glaesserella parasuis strain SC1401

48.352

100

0.506
  ssb Neisseria meningitidis MC58

47.222

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.489