Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUW60_RS02355 Genome accession   NZ_CP054877
Coordinates   491525..492022 (-) Length   165 a.a.
NCBI ID   WP_190600832.1    Uniprot ID   -
Organism   Candidatus Vesicomyosocius sp. SY067_SCS001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 486525..497022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW60_RS02340 nusB 486543..486968 (+) 426 WP_190600829.1 transcription antitermination factor NusB -
  HUW60_RS02345 metH 487205..490858 (-) 3654 WP_190600830.1 methionine synthase -
  HUW60_RS02350 - 491049..491444 (+) 396 WP_190600831.1 hypothetical protein -
  HUW60_RS02355 ssb 491525..492022 (-) 498 WP_190600832.1 single-stranded DNA-binding protein Machinery gene
  HUW60_RS02360 - 492056..493213 (-) 1158 WP_190600833.1 MFS transporter -
  HUW60_RS02365 - 493232..493999 (-) 768 WP_190600834.1 outer membrane protein assembly factor BamD -
  HUW60_RS02370 - 494098..496200 (+) 2103 WP_190600835.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  HUW60_RS02375 iscX 496275..496469 (+) 195 WP_190600836.1 Fe-S cluster assembly protein IscX -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18503.66 Da        Isoelectric Point: 5.2362

>NTDB_id=455243 HUW60_RS02355 WP_190600832.1 491525..492022(-) (ssb) [Candidatus Vesicomyosocius sp. SY067_SCS001]
MLGINKVILIGNVGQDIELKYTSDGRSIANLSVATNERWIDKNTGQKVDSTEWHRVNLFGKLADIASQYLHKGSKIYIEG
KLKTRKWQDKTGADRYITEIVVSGFNGTLQMLDSRHDNTDDMNNTLQPQQSSPSSTFASQQKTVLPISDPITPVENSEFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=455243 HUW60_RS02355 WP_190600832.1 491525..492022(-) (ssb) [Candidatus Vesicomyosocius sp. SY067_SCS001]
ATGTTAGGAATCAACAAAGTAATTTTAATAGGTAATGTAGGTCAAGATATAGAATTAAAATATACCTCTGATGGTAGATC
AATAGCTAATTTATCCGTTGCAACTAATGAAAGATGGATAGACAAGAATACAGGGCAAAAAGTTGATAGCACTGAGTGGC
ATAGAGTTAATTTATTTGGAAAATTAGCTGATATTGCTAGTCAATATCTACACAAAGGTTCTAAAATTTACATTGAAGGT
AAATTAAAAACTCGAAAATGGCAAGACAAAACTGGTGCTGATCGTTATATAACTGAAATAGTTGTATCTGGCTTTAATGG
CACATTACAAATGTTAGATAGTCGCCACGATAATACTGATGATATGAATAATACGCTCCAACCTCAACAATCATCCCCTT
CTTCTACATTTGCATCACAACAAAAGACAGTACTGCCAATATCAGACCCTATCACACCTGTTGAAAATTCTGAATTTGAT
GATGACATTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.315

100

0.521
  ssb Glaesserella parasuis strain SC1401

43.011

100

0.485
  ssb Neisseria meningitidis MC58

37.5

100

0.418
  ssb Neisseria gonorrhoeae MS11

37.569

100

0.412