Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUT23_RS28055 Genome accession   NZ_CP054871
Coordinates   6202034..6202543 (-) Length   169 a.a.
NCBI ID   WP_011063767.1    Uniprot ID   -
Organism   Pseudomonas protegens strain PPRAR07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6197034..6207543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT23_RS28040 (HUT23_28040) - 6197753..6199039 (+) 1287 WP_210483127.1 hypothetical protein -
  HUT23_RS28045 (HUT23_28045) - 6199043..6200869 (+) 1827 WP_015637224.1 hypothetical protein -
  HUT23_RS28050 (HUT23_28050) - 6200884..6201936 (+) 1053 WP_210483125.1 hypothetical protein -
  HUT23_RS28055 (HUT23_28055) ssb 6202034..6202543 (-) 510 WP_011063767.1 single-stranded DNA-binding protein Machinery gene
  HUT23_RS28060 (HUT23_28060) - 6202553..6203947 (-) 1395 WP_210483123.1 MFS transporter -
  HUT23_RS28065 (HUT23_28065) uvrA 6204126..6206960 (+) 2835 WP_210483121.1 excinuclease ABC subunit UvrA -
  HUT23_RS28070 (HUT23_28070) bfr 6207079..6207543 (-) 465 WP_011063770.1 bacterioferritin -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18784.96 Da        Isoelectric Point: 5.9455

>NTDB_id=455120 HUT23_RS28055 WP_011063767.1 6202034..6202543(-) (ssb) [Pseudomonas protegens strain PPRAR07]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVERTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPAPQPQRESRPAPQQAAPQPAPDF
DSFDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=455120 HUT23_RS28055 WP_011063767.1 6202034..6202543(-) (ssb) [Pseudomonas protegens strain PPRAR07]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGCGCACCGAGT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCGGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGTTGCTGGGTGGCCGTCCACAGGGCGACCAGCAAGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGTCCTGCTCCGCAGCCTCAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCTCCACAGCCGGCTCCGGACTTC
GACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.932

100

0.586
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.497
  ssb Neisseria meningitidis MC58

47.159

100

0.491