NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	JF380_RS08395	Genome accession	NZ_CP066492
Coordinates	1713651..1714337 (-)	Length	228 a.a.
NCBI ID	WP_000692886.1	Uniprot ID	-
Organism	Staphylococcus aureus strain nan_175_F371_ch
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1708651..1719337

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JF380_RS08350 (JF380_08350)	rpmA	1709365..1709649 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
JF380_RS08355 (JF380_08355)	-	1709661..1709981 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
JF380_RS08360 (JF380_08360)	rplU	1709987..1710295 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
JF380_RS08365 (JF380_08365)	mreD	1710588..1711118 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
JF380_RS08370 (JF380_08370)	mreC	1711118..1711960 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
JF380_RS08375 (JF380_08375)	-	1712159..1712278 (-)	120	WP_000840602.1	hypothetical protein	-
JF380_RS08380 (JF380_08380)	-	1712352..1712825 (-)	474	WP_001236734.1	DUF4930 family protein	-
JF380_RS08385 (JF380_08385)	-	1712985..1713182 (+)	198	WP_072467374.1	hypothetical protein	-
JF380_RS08390 (JF380_08390)	-	1713299..1713583 (-)	285	WP_000171859.1	hypothetical protein	-
JF380_RS08395 (JF380_08395)	ysxA/radC	1713651..1714337 (-)	687	WP_000692886.1	RadC family protein	Machinery gene
JF380_RS08400 (JF380_08400)	-	1714334..1715041 (-)	708	WP_000261108.1	prepilin peptidase	-
JF380_RS08405 (JF380_08405)	-	1715317..1716588 (-)	1272	WP_001108346.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
JF380_RS08410 (JF380_08410)	-	1716601..1719231 (-)	2631	WP_000425353.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25311.24 Da Isoelectric Point: 6.7572

                                >NTDB_id=455102 JF380_RS08395 WP_000692886.1 1713651..1714337(-) (ysxA/radC) [Staphylococcus aureus strain nan_175_F371_ch]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=455102 JF380_RS08395 WP_000692886.1 1713651..1714337(-) (ysxA/radC) [Staphylococcus aureus strain nan_175_F371_ch]

TTGAAAATTAAAGAAATGGTAACTTCGGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACCAGTCTTGTTGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0455102