Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUT29_RS27780 Genome accession   NZ_CP054865
Coordinates   6239526..6240038 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain PCLSL01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6234526..6245038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT29_RS27760 (HUT29_27775) clsB 6235271..6236572 (+) 1302 WP_124303707.1 cardiolipin synthase ClsB -
  HUT29_RS27765 (HUT29_27780) - 6236559..6237551 (+) 993 WP_025807820.1 lysylphosphatidylglycerol synthase domain-containing protein -
  HUT29_RS27770 (HUT29_27785) - 6237734..6238741 (-) 1008 WP_124303709.1 GlxA family transcriptional regulator -
  HUT29_RS27775 (HUT29_27790) - 6238845..6239399 (+) 555 WP_124303711.1 cysteine hydrolase family protein -
  HUT29_RS27780 (HUT29_27795) ssb 6239526..6240038 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  HUT29_RS27785 (HUT29_27800) - 6240048..6241442 (-) 1395 WP_063433182.1 MFS transporter -
  HUT29_RS27790 (HUT29_27805) uvrA 6241623..6244457 (+) 2835 WP_025807824.1 excinuclease ABC subunit UvrA -
  HUT29_RS27795 (HUT29_27810) bfr 6244551..6245015 (-) 465 WP_124303713.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=455045 HUT29_RS27780 WP_009045846.1 6239526..6240038(-) (ssb) [Pseudomonas chlororaphis strain PCLSL01]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=455045 HUT29_RS27780 WP_009045846.1 6239526..6240038(-) (ssb) [Pseudomonas chlororaphis strain PCLSL01]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTATACCACTGAAATCATCGTCGACATGCAAGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCACAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCACCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5