Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HQ775_RS12560 Genome accession   NZ_CP054858
Coordinates   2637987..2638496 (+) Length   169 a.a.
NCBI ID   WP_180901834.1    Uniprot ID   -
Organism   Martelella sp. NC18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2632987..2643496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ775_RS12550 - 2633999..2634799 (-) 801 WP_180901832.1 DUF72 domain-containing protein -
  HQ775_RS12555 uvrA 2634809..2637730 (-) 2922 WP_180901833.1 excinuclease ABC subunit UvrA -
  HQ775_RS12560 ssb 2637987..2638496 (+) 510 WP_180901834.1 single-stranded DNA-binding protein Machinery gene
  HQ775_RS12565 - 2638643..2639272 (-) 630 WP_180901835.1 MarC family protein -
  HQ775_RS12570 gyrA 2639601..2642417 (+) 2817 WP_180901836.1 DNA gyrase subunit A -
  HQ775_RS12575 coaD 2642560..2643054 (+) 495 WP_180901837.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18086.74 Da        Isoelectric Point: 5.0420

>NTDB_id=455017 HQ775_RS12560 WP_180901834.1 2637987..2638496(+) (ssb) [Martelella sp. NC18]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRVATSESWRDRNSGERKERTEWHRVVIFSEGLCKIAEQYLRKGSKVYI
EGQIQTRKWTDQGGQERYSTEIVLQGFNATLTMLDGRGEGGGGQGAGSQGGGDQGGGYDDYDSRPASGGGGGARSGGGFS
QDLDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=455017 HQ775_RS12560 WP_180901834.1 2637987..2638496(+) (ssb) [Martelella sp. NC18]
ATGGCAGGTAGTGTAAACAAGGTCATCCTCGTCGGCAATCTCGGAGCGGACCCGGAAATCCGGCGTACACAGGATGGCAG
ACCGATCGCAAACCTGCGGGTGGCCACATCGGAAAGCTGGCGCGACCGCAATTCCGGCGAGCGCAAGGAGCGCACGGAAT
GGCATCGCGTGGTGATCTTCAGCGAGGGATTGTGCAAGATTGCGGAGCAATATCTGCGCAAGGGCTCCAAGGTCTATATC
GAAGGCCAGATCCAGACCCGCAAATGGACCGATCAGGGTGGCCAGGAACGGTATTCGACCGAGATCGTGCTGCAGGGTTT
CAACGCCACGCTGACGATGCTCGACGGCCGCGGTGAAGGCGGCGGCGGCCAGGGCGCCGGCAGCCAGGGCGGTGGAGACC
AGGGCGGCGGCTATGACGACTATGATTCGCGGCCGGCATCCGGTGGCGGCGGTGGCGCCCGCAGCGGCGGCGGCTTCTCG
CAGGACCTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.462

100

0.544
  ssb Vibrio cholerae strain A1552

50

100

0.515
  ssb Neisseria meningitidis MC58

41.111

100

0.438
  ssb Neisseria gonorrhoeae MS11

41.111

100

0.438