Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUI97_RS18060 Genome accession   NZ_CP054855
Coordinates   3957546..3958133 (+) Length   195 a.a.
NCBI ID   WP_206900601.1    Uniprot ID   -
Organism   Aeromonas veronii strain 1708-29120     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3952546..3963133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUI97_RS18030 (HUI97_18030) - 3952748..3954025 (-) 1278 WP_206900599.1 curlin -
  HUI97_RS18035 (HUI97_18035) - 3954060..3954581 (-) 522 WP_206900600.1 curlin -
  HUI97_RS18040 (HUI97_18040) - 3954769..3955608 (-) 840 WP_005355003.1 CsgG/HfaB family protein -
  HUI97_RS18045 (HUI97_18045) - 3955616..3956017 (-) 402 WP_201996334.1 curli assembly protein CsgF -
  HUI97_RS18050 (HUI97_18050) - 3956029..3956472 (-) 444 WP_201984298.1 curli production assembly/transport protein CsgE -
  HUI97_RS18055 (HUI97_18055) - 3956472..3957119 (-) 648 WP_042063492.1 LuxR C-terminal-related transcriptional regulator -
  HUI97_RS18060 (HUI97_18060) ssb 3957546..3958133 (+) 588 WP_206900601.1 single-stranded DNA-binding protein Machinery gene
  HUI97_RS18065 (HUI97_18065) - 3958299..3959624 (+) 1326 WP_043147737.1 site-specific integrase -
  HUI97_RS18070 (HUI97_18070) - 3959617..3961185 (+) 1569 WP_174218922.1 site-specific integrase -
  HUI97_RS18075 (HUI97_18075) - 3961195..3963072 (+) 1878 WP_034524358.1 integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21565.08 Da        Isoelectric Point: 5.9301

>NTDB_id=454998 HUI97_RS18060 WP_206900601.1 3957546..3958133(+) (ssb) [Aeromonas veronii strain 1708-29120]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGIGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=454998 HUI97_RS18060 WP_206900601.1 3957546..3958133(+) (ssb) [Aeromonas veronii strain 1708-29120]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTTGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAAACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGTGGTCAGGGTATCGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456