Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HUI95_RS20045 | Genome accession | NZ_CP054854 |
| Coordinates | 4349278..4349853 (+) | Length | 191 a.a. |
| NCBI ID | WP_005306061.1 | Uniprot ID | K1JJU3 |
| Organism | Aeromonas dhakensis strain 1706-28330 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4349278..4372882 | 4349278..4349853 | within | 0 |
Gene organization within MGE regions
Location: 4349278..4372882
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUI95_RS20045 (HUI95_20020) | ssb | 4349278..4349853 (+) | 576 | WP_005306061.1 | single-stranded DNA-binding protein | Machinery gene |
| HUI95_RS20050 (HUI95_20025) | - | 4350014..4351207 (+) | 1194 | WP_206865948.1 | site-specific integrase | - |
| HUI95_RS20055 (HUI95_20030) | - | 4351173..4352711 (+) | 1539 | WP_242526982.1 | site-specific integrase | - |
| HUI95_RS20060 (HUI95_20035) | - | 4352708..4354771 (+) | 2064 | WP_242526983.1 | integrase | - |
| HUI95_RS20065 (HUI95_20040) | - | 4354768..4355187 (+) | 420 | WP_206865949.1 | hypothetical protein | - |
| HUI95_RS20070 (HUI95_20045) | - | 4355184..4355690 (+) | 507 | WP_206865950.1 | hypothetical protein | - |
| HUI95_RS20075 (HUI95_20050) | - | 4355687..4357936 (+) | 2250 | WP_206865951.1 | AAA family ATPase | - |
| HUI95_RS20080 (HUI95_20055) | - | 4358335..4358562 (-) | 228 | WP_081043428.1 | helix-turn-helix transcriptional regulator | - |
| HUI95_RS20085 (HUI95_20060) | - | 4358673..4358915 (+) | 243 | WP_206865952.1 | hypothetical protein | - |
| HUI95_RS20090 (HUI95_20065) | - | 4359400..4360950 (-) | 1551 | Protein_3902 | IS66 family transposase | - |
| HUI95_RS20095 (HUI95_20070) | tnpB | 4360981..4361172 (-) | 192 | Protein_3903 | IS66 family insertion sequence element accessory protein TnpB | - |
| HUI95_RS20100 (HUI95_20075) | - | 4361241..4362203 (+) | 963 | WP_206865953.1 | IS1595 family transposase | - |
| HUI95_RS20105 (HUI95_20080) | tnpB | 4362204..4362368 (-) | 165 | Protein_3905 | IS66 family insertion sequence element accessory protein TnpB | - |
| HUI95_RS20110 (HUI95_20085) | - | 4362365..4362766 (-) | 402 | WP_206865955.1 | transposase | - |
| HUI95_RS20115 (HUI95_20090) | - | 4362966..4364009 (-) | 1044 | WP_277988286.1 | OmpA family protein | - |
| HUI95_RS20120 (HUI95_20095) | - | 4364088..4364651 (-) | 564 | WP_206865956.1 | outer membrane beta-barrel protein | - |
| HUI95_RS20125 (HUI95_20100) | - | 4364854..4366101 (-) | 1248 | WP_206865957.1 | winged helix-turn-helix domain-containing protein | - |
| HUI95_RS20130 (HUI95_20105) | - | 4366691..4367884 (-) | 1194 | WP_206865958.1 | winged helix-turn-helix domain-containing protein | - |
| HUI95_RS20135 (HUI95_20110) | - | 4368184..4369337 (+) | 1154 | WP_206865959.1 | IS3 family transposase | - |
| HUI95_RS20140 (HUI95_20115) | - | 4369353..4370450 (-) | 1098 | Protein_3912 | IS3 family transposase | - |
| HUI95_RS22950 (HUI95_20120) | - | 4370616..4370729 (-) | 114 | Protein_3913 | IS110 family transposase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21162.54 Da Isoelectric Point: 5.9247
>NTDB_id=454973 HUI95_RS20045 WP_005306061.1 4349278..4349853(+) (ssb) [Aeromonas dhakensis strain 1706-28330]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGAGQGMGGQSQGNWGQPQQGMQSQQPMNQSRPAPQQNMQQQ
QGGYSRPAQQPQSAPPVYNEPPMDFDDDIPF
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDGFSGVMQMLGGRPQGAGQGMGGQSQGNWGQPQQGMQSQQPMNQSRPAPQQNMQQQ
QGGYSRPAQQPQSAPPVYNEPPMDFDDDIPF
Nucleotide
Download Length: 576 bp
>NTDB_id=454973 HUI95_RS20045 WP_005306061.1 4349278..4349853(+) (ssb) [Aeromonas dhakensis strain 1706-28330]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTGGTCTTCATGGGCAAGCTGGCCGAAGTGGCAGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGCGGCCAGGAGCGTTATACCACCGAGGTGCTGGTCGATGGTTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGCCGGTCAGGGCATGGGCGGTCAGTCCCAGGGCAACTGGG
GTCAGCCGCAACAGGGCATGCAGTCCCAGCAGCCGATGAACCAGTCCCGCCCGGCTCCGCAGCAGAATATGCAGCAACAG
CAGGGCGGTTATAGCCGTCCGGCCCAGCAGCCGCAATCCGCTCCGCCGGTATACAACGAGCCGCCGATGGATTTCGACGA
CGACATCCCGTTCTAG
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACCAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTGGTCTTCATGGGCAAGCTGGCCGAAGTGGCAGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTG
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGCGGCCAGGAGCGTTATACCACCGAGGTGCTGGTCGATGGTTT
CAGCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGCCGGTCAGGGCATGGGCGGTCAGTCCCAGGGCAACTGGG
GTCAGCCGCAACAGGGCATGCAGTCCCAGCAGCCGATGAACCAGTCCCGCCCGGCTCCGCAGCAGAATATGCAGCAACAG
CAGGGCGGTTATAGCCGTCCGGCCCAGCAGCCGCAATCCGCTCCGCCGGTATACAACGAGCCGCCGATGGATTTCGACGA
CGACATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
69.388 |
100 |
0.712 |
| ssb | Glaesserella parasuis strain SC1401 |
52.381 |
98.953 |
0.518 |
| ssb | Neisseria gonorrhoeae MS11 |
47.059 |
97.906 |
0.461 |
| ssb | Neisseria meningitidis MC58 |
45.699 |
97.382 |
0.445 |