Detailed information
Bioinformatically predicted
Overview
| Name | pilQ | Type | Machinery gene |
| Locus tag | HUS13_RS30025 | Genome accession | NZ_CP054845 |
| Coordinates | 6365488..6367632 (-) | Length | 714 a.a. |
| NCBI ID | WP_003095835.1 | Uniprot ID | A0AAQ3R0R3 |
| Organism | Pseudomonas aeruginosa strain SE5429 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 6365488..6413149 | 6365488..6367632 | within | 0 |
Gene organization within MGE regions
Location: 6365488..6413149
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUS13_RS30025 (HUS13_30015) | pilQ | 6365488..6367632 (-) | 2145 | WP_003095835.1 | type 4a pilus secretin PilQ | Machinery gene |
| HUS13_RS30030 (HUS13_30020) | pilP | 6367686..6368210 (-) | 525 | WP_003095836.1 | type 4a pilus biogenesis lipoprotein PilP | - |
| HUS13_RS30035 (HUS13_30025) | pilO | 6368207..6368830 (-) | 624 | WP_003095838.1 | type 4a pilus biogenesis protein PilO | - |
| HUS13_RS30040 (HUS13_30030) | - | 6368827..6368952 (-) | 126 | Protein_5956 | pilus assembly protein PilN | - |
| HUS13_RS30045 (HUS13_30035) | - | 6369039..6369263 (-) | 225 | WP_003121473.1 | hypothetical protein | - |
| HUS13_RS30050 (HUS13_30040) | - | 6369337..6369624 (-) | 288 | WP_010791802.1 | hypothetical protein | - |
| HUS13_RS30055 (HUS13_30045) | - | 6369621..6370768 (-) | 1148 | Protein_5959 | hypothetical protein | - |
| HUS13_RS34220 (HUS13_30050) | - | 6370765..6372985 (-) | 2221 | Protein_5960 | phage tail protein | - |
| HUS13_RS30065 (HUS13_30055) | - | 6372975..6373193 (-) | 219 | WP_003117240.1 | hypothetical protein | - |
| HUS13_RS30070 (HUS13_30060) | - | 6373190..6373429 (-) | 240 | WP_003094581.1 | hypothetical protein | - |
| HUS13_RS30075 (HUS13_30065) | - | 6373438..6374259 (-) | 822 | WP_023127654.1 | phage BR0599 family protein | - |
| HUS13_RS30080 (HUS13_30070) | - | 6374249..6375952 (-) | 1704 | WP_034066088.1 | hypothetical protein | - |
| HUS13_RS30085 (HUS13_30075) | - | 6375952..6376875 (-) | 924 | WP_031638076.1 | hypothetical protein | - |
| HUS13_RS30090 (HUS13_30080) | - | 6376877..6377832 (-) | 956 | Protein_5966 | hypothetical protein | - |
| HUS13_RS30095 (HUS13_30085) | - | 6377840..6381682 (-) | 3843 | WP_034066087.1 | phage tail length tape measure family protein | - |
| HUS13_RS30100 (HUS13_30090) | - | 6381770..6381913 (-) | 144 | WP_023442967.1 | hypothetical protein | - |
| HUS13_RS30105 (HUS13_30095) | - | 6381910..6382416 (-) | 507 | WP_031638436.1 | DUF6631 family protein | - |
| HUS13_RS33950 | - | 6382544..6382777 (-) | 234 | WP_242532295.1 | hypothetical protein | - |
| HUS13_RS33955 | - | 6382735..6383175 (-) | 441 | WP_242532296.1 | hypothetical protein | - |
| HUS13_RS30115 (HUS13_30105) | - | 6383179..6383328 (-) | 150 | WP_003094265.1 | hypothetical protein | - |
| HUS13_RS33960 | - | 6384041..6384355 (-) | 315 | WP_242532297.1 | phage protein Gp36 family protein | - |
| HUS13_RS30125 (HUS13_30115) | - | 6384363..6384587 (-) | 225 | WP_242532298.1 | hypothetical protein | - |
| HUS13_RS34150 | - | 6384560..6384691 (-) | 132 | WP_277989584.1 | hypothetical protein | - |
| HUS13_RS30130 (HUS13_30120) | - | 6384691..6384885 (-) | 195 | WP_003094256.1 | hypothetical protein | - |
| HUS13_RS30135 (HUS13_30125) | - | 6384932..6385861 (-) | 930 | WP_034066086.1 | hypothetical protein | - |
| HUS13_RS30140 (HUS13_30130) | - | 6385873..6386190 (-) | 318 | WP_242532299.1 | DUF2190 domain-containing protein | - |
| HUS13_RS30145 (HUS13_30135) | - | 6386187..6387497 (-) | 1311 | WP_242532300.1 | peptidase | - |
| HUS13_RS30150 (HUS13_30140) | - | 6387716..6388285 (-) | 570 | WP_003139982.1 | phage virion morphogenesis protein | - |
| HUS13_RS33965 | - | 6388282..6388614 (-) | 333 | WP_242532301.1 | hypothetical protein | - |
| HUS13_RS33970 | - | 6388731..6389249 (-) | 519 | WP_242532302.1 | phage minor head protein | - |
| HUS13_RS33975 | - | 6389146..6389535 (-) | 390 | WP_242532303.1 | hypothetical protein | - |
| HUS13_RS30160 (HUS13_30150) | - | 6389877..6391016 (-) | 1140 | WP_242532304.1 | DUF935 family protein | - |
| HUS13_RS30165 (HUS13_30155) | - | 6391016..6392719 (-) | 1704 | WP_023657074.1 | phage protein gp28 | - |
| HUS13_RS30170 (HUS13_30160) | - | 6392721..6393296 (-) | 576 | WP_003094238.1 | DUF3486 family protein | - |
| HUS13_RS30175 (HUS13_30165) | - | 6393302..6393610 (-) | 309 | WP_003094236.1 | hypothetical protein | - |
| HUS13_RS30180 (HUS13_30170) | - | 6393600..6393989 (-) | 390 | WP_003094234.1 | hypothetical protein | - |
| HUS13_RS30185 (HUS13_30175) | - | 6393993..6394604 (-) | 612 | WP_023657073.1 | hypothetical protein | - |
| HUS13_RS30190 (HUS13_30180) | - | 6394785..6395414 (-) | 630 | WP_034066085.1 | transglycosylase SLT domain-containing protein | - |
| HUS13_RS30195 (HUS13_30185) | - | 6395411..6395569 (-) | 159 | WP_003094227.1 | hypothetical protein | - |
| HUS13_RS30200 (HUS13_30190) | - | 6395572..6395868 (-) | 297 | WP_003152187.1 | putative holin | - |
| HUS13_RS30205 (HUS13_30195) | - | 6396042..6396632 (+) | 591 | WP_033990716.1 | hypothetical protein | - |
| HUS13_RS30210 | - | 6396887..6397390 (-) | 504 | WP_034066089.1 | hypothetical protein | - |
| HUS13_RS30215 (HUS13_30205) | - | 6397408..6397779 (-) | 372 | WP_023127888.1 | helix-turn-helix domain-containing protein | - |
| HUS13_RS30220 (HUS13_30210) | - | 6397885..6398115 (+) | 231 | WP_003094216.1 | DNA-binding protein | - |
| HUS13_RS30225 (HUS13_30215) | - | 6398400..6398624 (-) | 225 | WP_023127889.1 | hypothetical protein | - |
| HUS13_RS30230 (HUS13_30220) | - | 6398748..6399236 (+) | 489 | WP_023127890.1 | hypothetical protein | - |
| HUS13_RS30235 (HUS13_30225) | - | 6399229..6399489 (+) | 261 | WP_003094213.1 | hypothetical protein | - |
| HUS13_RS30240 (HUS13_30230) | - | 6399486..6399800 (+) | 315 | WP_003094211.1 | hypothetical protein | - |
| HUS13_RS30245 (HUS13_30235) | - | 6399810..6400787 (+) | 978 | WP_034066084.1 | hypothetical protein | - |
| HUS13_RS30250 (HUS13_30240) | - | 6400791..6402575 (+) | 1785 | WP_034023955.1 | DDE-type integrase/transposase/recombinase | - |
| HUS13_RS30255 (HUS13_30245) | - | 6402575..6403741 (+) | 1167 | WP_003094200.1 | AAA family ATPase | - |
| HUS13_RS30260 (HUS13_30250) | - | 6403743..6404084 (+) | 342 | WP_003094197.1 | hypothetical protein | - |
| HUS13_RS30265 (HUS13_30255) | - | 6404081..6404362 (+) | 282 | WP_003094195.1 | hypothetical protein | - |
| HUS13_RS30270 (HUS13_30260) | - | 6404362..6404736 (+) | 375 | WP_003094193.1 | hypothetical protein | - |
| HUS13_RS30275 (HUS13_30265) | - | 6404729..6404929 (+) | 201 | WP_033990702.1 | bacteriophage protein | - |
| HUS13_RS30280 (HUS13_30270) | - | 6404922..6405545 (+) | 624 | WP_031638066.1 | DUF3164 family protein | - |
| HUS13_RS30285 (HUS13_30275) | - | 6405547..6406455 (+) | 909 | WP_242532305.1 | DUF2786 domain-containing protein | - |
| HUS13_RS30290 (HUS13_30280) | - | 6406457..6406924 (+) | 468 | WP_003129239.1 | hypothetical protein | - |
| HUS13_RS30295 (HUS13_30285) | - | 6406911..6407474 (+) | 564 | WP_023657063.1 | regulatory protein GemA | - |
| HUS13_RS30300 (HUS13_30290) | - | 6407477..6407836 (+) | 360 | WP_003094179.1 | Mor transcription activator family protein | - |
| HUS13_RS30305 (HUS13_30295) | rarD | 6407959..6408594 (-) | 636 | Protein_6013 | EamA family transporter RarD | - |
| HUS13_RS30310 (HUS13_30300) | - | 6408797..6409771 (-) | 975 | WP_003084794.1 | serine/threonine protein kinase | - |
| HUS13_RS30315 (HUS13_30305) | - | 6409833..6410591 (-) | 759 | WP_003084796.1 | TOBE domain-containing protein | - |
| HUS13_RS30320 (HUS13_30310) | - | 6410659..6410979 (-) | 321 | WP_003084799.1 | YfiM family lipoprotein | - |
| HUS13_RS30325 (HUS13_30315) | - | 6411021..6411746 (-) | 726 | WP_014604095.1 | ComF family protein | - |
| HUS13_RS30330 (HUS13_30320) | - | 6411885..6412178 (-) | 294 | WP_003084806.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 714 a.a. Molecular weight: 77329.85 Da Isoelectric Point: 5.2219
>NTDB_id=454943 HUS13_RS30025 WP_003095835.1 6365488..6367632(-) (pilQ) [Pseudomonas aeruginosa strain SE5429]
MNSGLSRLGIALLAAMFAPALLAADLEKLDVAALPGDRVELKLQFDEPVAAPRGYTIEQPARIALDLPGVQNKLGTKNRE
LSVGNTRSVTVVEAKDRTRLIINLTTLSSYTTRVEGNNLFVVVGNSPAGASVASAAPVKASPAPASYAQPIKPKPYVPAG
RAIRNIDFQRGEKGEGNVVIDLSDPTLSPDIQEQGGKIRLDFAKTQLPDALRVRLDVKDFATPVQFVNASAQSDRTSITI
EPSGLYDYLVYQTDNRLTVSIKPMTTEDAERRKKDNFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITL
RLQNVPWDQALDLVLKTKGLDKRKLGNVLLVAPADEIAARERQELEAQKQIAELAPLRRELIQVNYAKAADIAKLFQSVT
SDGGQEGKEGGRGSITVDDRTNSIIAYQPQERLDELRRIVSQLDIPVRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNW
NGYGKDGNIGIKDEDGMNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNGEIVS
QPKVVTSDKETAKILKGQEVPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAPDFDRALNGVPPINKN
EVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLGDLPYLGRLFRRDTVSDVKNELLVFLTPRIMNNQAIAIGR
MNSGLSRLGIALLAAMFAPALLAADLEKLDVAALPGDRVELKLQFDEPVAAPRGYTIEQPARIALDLPGVQNKLGTKNRE
LSVGNTRSVTVVEAKDRTRLIINLTTLSSYTTRVEGNNLFVVVGNSPAGASVASAAPVKASPAPASYAQPIKPKPYVPAG
RAIRNIDFQRGEKGEGNVVIDLSDPTLSPDIQEQGGKIRLDFAKTQLPDALRVRLDVKDFATPVQFVNASAQSDRTSITI
EPSGLYDYLVYQTDNRLTVSIKPMTTEDAERRKKDNFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITL
RLQNVPWDQALDLVLKTKGLDKRKLGNVLLVAPADEIAARERQELEAQKQIAELAPLRRELIQVNYAKAADIAKLFQSVT
SDGGQEGKEGGRGSITVDDRTNSIIAYQPQERLDELRRIVSQLDIPVRQVMIEARIVEANVGYDKSLGVRWGGAYHKGNW
NGYGKDGNIGIKDEDGMNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNGEIVS
QPKVVTSDKETAKILKGQEVPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIVEVKVTKDAPDFDRALNGVPPINKN
EVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLGDLPYLGRLFRRDTVSDVKNELLVFLTPRIMNNQAIAIGR
Nucleotide
Download Length: 2145 bp
>NTDB_id=454943 HUS13_RS30025 WP_003095835.1 6365488..6367632(-) (pilQ) [Pseudomonas aeruginosa strain SE5429]
ATGAACAGTGGCCTCTCGCGCCTCGGGATCGCTTTGCTGGCCGCCATGTTCGCGCCGGCATTGCTCGCCGCGGACCTGGA
GAAACTCGACGTGGCGGCACTGCCTGGCGACCGGGTCGAGCTAAAGCTGCAGTTCGACGAGCCCGTCGCCGCGCCGCGTG
GCTATACCATCGAGCAGCCGGCGCGAATCGCCCTCGATCTGCCGGGGGTGCAGAACAAACTCGGCACCAAGAATCGCGAG
CTGAGCGTGGGCAATACGCGCAGCGTCACGGTGGTCGAGGCGAAGGATCGCACACGGTTGATCATCAACCTGACCACGCT
GTCGTCCTACACCACCCGGGTGGAAGGCAACAACCTCTTCGTGGTGGTCGGCAATTCGCCGGCCGGCGCCAGCGTCGCTT
CCGCCGCTCCGGTCAAGGCAAGCCCGGCTCCGGCCAGCTATGCCCAGCCGATCAAGCCCAAGCCGTACGTGCCGGCGGGT
CGTGCCATCCGCAACATCGATTTCCAGCGTGGCGAAAAGGGCGAGGGCAACGTGGTCATCGACCTGTCCGACCCGACCTT
GAGCCCGGATATTCAAGAACAGGGCGGCAAGATCCGCCTGGACTTCGCCAAGACCCAGCTGCCGGATGCACTGCGGGTTC
GCCTGGACGTCAAGGACTTCGCCACGCCGGTGCAGTTCGTCAACGCCAGCGCGCAATCCGACCGTACCAGCATCACCATC
GAACCGAGCGGGCTCTACGACTATCTGGTCTACCAGACCGACAATCGCCTGACCGTCAGCATCAAGCCGATGACCACGGA
AGACGCCGAGCGGCGCAAGAAGGACAATTTCGCCTATACCGGTGAGAAACTGTCGCTGAACTTCCAGGACATCGACGTGC
GTTCGGTACTGCAGCTGATCGCCGACTTCACCGACCTGAACCTGGTGGCCTCGGATACCGTGCAGGGCAATATCACCCTG
CGCCTGCAGAACGTGCCGTGGGACCAGGCGCTGGACCTGGTGCTGAAGACCAAGGGCCTGGACAAGCGCAAGCTCGGCAA
CGTGCTGCTGGTGGCCCCGGCCGACGAGATCGCCGCCCGCGAGCGCCAGGAGCTGGAAGCGCAGAAGCAGATCGCCGAGT
TGGCGCCACTGCGTCGGGAACTGATCCAGGTGAACTACGCCAAGGCCGCGGACATCGCCAAGCTGTTCCAGTCGGTGACC
AGCGATGGTGGCCAGGAAGGCAAGGAAGGCGGGCGCGGCTCGATCACCGTCGACGACCGCACCAACAGCATCATCGCCTA
TCAGCCCCAGGAGCGACTGGACGAACTGCGGCGGATCGTTTCGCAGCTGGATATTCCGGTGCGCCAGGTGATGATCGAGG
CACGCATCGTCGAGGCCAACGTCGGTTACGACAAGAGCCTCGGTGTGCGCTGGGGTGGCGCTTATCACAAGGGCAACTGG
AACGGCTACGGCAAGGACGGCAATATCGGGATCAAGGACGAGGACGGCATGAACTGCGGCCCGATCGCCGGCAACTGTAC
TTTCCCCACCACGGGAACCAGCAAGTCGCCGTCGCCGTTCGTCGACATCGGCGCCAAGGATGCCACCTCCGGGATCGGCA
TCGGCTTCATCACCGACAACATCATCCTCGACCTGCAACTGTCGGCGATGGAAAAGACCGGCAACGGCGAGATCGTCTCC
CAGCCCAAGGTCGTGACCTCGGACAAGGAAACCGCGAAGATCCTCAAGGGCCAGGAAGTACCCTACCAGGAGGCCAGCTC
CAGCGGCGCTACCAGCACCTCGTTCAAGGAGGCCGCGCTGTCCCTCGAGGTGACCCCGCAGATCACCCCGGACAACCGGA
TCATCGTCGAAGTGAAGGTGACCAAGGATGCGCCGGACTTCGATCGCGCACTGAACGGCGTACCGCCGATCAACAAGAAC
GAGGTCAACGCCAAGATCCTGGTCAACGACGGCGAGACCATCGTCATCGGCGGCGTGTTCAGCAACACCCAGAGCAAGTC
GGTGGACAAGGTGCCGTTCCTCGGCGACCTGCCTTACCTGGGGCGGCTGTTCCGGCGCGATACGGTCTCGGACGTGAAAA
ACGAACTTCTGGTTTTCCTGACACCGCGGATCATGAATAATCAGGCCATCGCAATCGGTCGCTGA
ATGAACAGTGGCCTCTCGCGCCTCGGGATCGCTTTGCTGGCCGCCATGTTCGCGCCGGCATTGCTCGCCGCGGACCTGGA
GAAACTCGACGTGGCGGCACTGCCTGGCGACCGGGTCGAGCTAAAGCTGCAGTTCGACGAGCCCGTCGCCGCGCCGCGTG
GCTATACCATCGAGCAGCCGGCGCGAATCGCCCTCGATCTGCCGGGGGTGCAGAACAAACTCGGCACCAAGAATCGCGAG
CTGAGCGTGGGCAATACGCGCAGCGTCACGGTGGTCGAGGCGAAGGATCGCACACGGTTGATCATCAACCTGACCACGCT
GTCGTCCTACACCACCCGGGTGGAAGGCAACAACCTCTTCGTGGTGGTCGGCAATTCGCCGGCCGGCGCCAGCGTCGCTT
CCGCCGCTCCGGTCAAGGCAAGCCCGGCTCCGGCCAGCTATGCCCAGCCGATCAAGCCCAAGCCGTACGTGCCGGCGGGT
CGTGCCATCCGCAACATCGATTTCCAGCGTGGCGAAAAGGGCGAGGGCAACGTGGTCATCGACCTGTCCGACCCGACCTT
GAGCCCGGATATTCAAGAACAGGGCGGCAAGATCCGCCTGGACTTCGCCAAGACCCAGCTGCCGGATGCACTGCGGGTTC
GCCTGGACGTCAAGGACTTCGCCACGCCGGTGCAGTTCGTCAACGCCAGCGCGCAATCCGACCGTACCAGCATCACCATC
GAACCGAGCGGGCTCTACGACTATCTGGTCTACCAGACCGACAATCGCCTGACCGTCAGCATCAAGCCGATGACCACGGA
AGACGCCGAGCGGCGCAAGAAGGACAATTTCGCCTATACCGGTGAGAAACTGTCGCTGAACTTCCAGGACATCGACGTGC
GTTCGGTACTGCAGCTGATCGCCGACTTCACCGACCTGAACCTGGTGGCCTCGGATACCGTGCAGGGCAATATCACCCTG
CGCCTGCAGAACGTGCCGTGGGACCAGGCGCTGGACCTGGTGCTGAAGACCAAGGGCCTGGACAAGCGCAAGCTCGGCAA
CGTGCTGCTGGTGGCCCCGGCCGACGAGATCGCCGCCCGCGAGCGCCAGGAGCTGGAAGCGCAGAAGCAGATCGCCGAGT
TGGCGCCACTGCGTCGGGAACTGATCCAGGTGAACTACGCCAAGGCCGCGGACATCGCCAAGCTGTTCCAGTCGGTGACC
AGCGATGGTGGCCAGGAAGGCAAGGAAGGCGGGCGCGGCTCGATCACCGTCGACGACCGCACCAACAGCATCATCGCCTA
TCAGCCCCAGGAGCGACTGGACGAACTGCGGCGGATCGTTTCGCAGCTGGATATTCCGGTGCGCCAGGTGATGATCGAGG
CACGCATCGTCGAGGCCAACGTCGGTTACGACAAGAGCCTCGGTGTGCGCTGGGGTGGCGCTTATCACAAGGGCAACTGG
AACGGCTACGGCAAGGACGGCAATATCGGGATCAAGGACGAGGACGGCATGAACTGCGGCCCGATCGCCGGCAACTGTAC
TTTCCCCACCACGGGAACCAGCAAGTCGCCGTCGCCGTTCGTCGACATCGGCGCCAAGGATGCCACCTCCGGGATCGGCA
TCGGCTTCATCACCGACAACATCATCCTCGACCTGCAACTGTCGGCGATGGAAAAGACCGGCAACGGCGAGATCGTCTCC
CAGCCCAAGGTCGTGACCTCGGACAAGGAAACCGCGAAGATCCTCAAGGGCCAGGAAGTACCCTACCAGGAGGCCAGCTC
CAGCGGCGCTACCAGCACCTCGTTCAAGGAGGCCGCGCTGTCCCTCGAGGTGACCCCGCAGATCACCCCGGACAACCGGA
TCATCGTCGAAGTGAAGGTGACCAAGGATGCGCCGGACTTCGATCGCGCACTGAACGGCGTACCGCCGATCAACAAGAAC
GAGGTCAACGCCAAGATCCTGGTCAACGACGGCGAGACCATCGTCATCGGCGGCGTGTTCAGCAACACCCAGAGCAAGTC
GGTGGACAAGGTGCCGTTCCTCGGCGACCTGCCTTACCTGGGGCGGCTGTTCCGGCGCGATACGGTCTCGGACGTGAAAA
ACGAACTTCTGGTTTTCCTGACACCGCGGATCATGAATAATCAGGCCATCGCAATCGGTCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilQ | Pseudomonas aeruginosa PAK |
98.039 |
100 |
0.98 |
| pilQ | Acinetobacter baumannii strain A118 |
41.268 |
99.44 |
0.41 |
| pilQ | Acinetobacter baumannii D1279779 |
41.268 |
99.44 |
0.41 |
| comQ | Acinetobacter baylyi ADP1 |
41.536 |
98.459 |
0.409 |