Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUK68_RS00270 Genome accession   NZ_CP054840
Coordinates   53202..53774 (-) Length   190 a.a.
NCBI ID   WP_175502384.1    Uniprot ID   A0A6N1WWV7
Organism   Comamonas antarctica strain 16-35-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 48202..58774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK68_RS00250 (HUK68_00250) - 48297..48746 (-) 450 WP_175502380.1 MerR family transcriptional regulator -
  HUK68_RS00255 (HUK68_00255) - 48814..50052 (+) 1239 WP_175502381.1 MFS transporter -
  HUK68_RS00260 (HUK68_00260) - 50068..51477 (-) 1410 WP_175502382.1 DUF1254 domain-containing protein -
  HUK68_RS00265 (HUK68_00265) - 51521..52801 (-) 1281 WP_175502383.1 DUF1214 domain-containing protein -
  HUK68_RS00270 (HUK68_00270) ssb 53202..53774 (-) 573 WP_175502384.1 single-stranded DNA-binding protein Machinery gene
  HUK68_RS00275 (HUK68_00275) - 53939..55120 (-) 1182 WP_175505690.1 MFS transporter -
  HUK68_RS00280 (HUK68_00280) uvrA 55412..58396 (+) 2985 WP_244146307.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20188.27 Da        Isoelectric Point: 5.9554

>NTDB_id=454830 HUK68_RS00270 WP_175502384.1 53202..53774(-) (ssb) [Comamonas antarctica strain 16-35-5]
MASVNKVIIVGNLGRDPEMRAFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQATGQERYATEIRADTMQMLGSRQGMGGGQGGGYGDDSGYGDNGGGNGGGNGGYEAPRRAAPAPRAAAPAP
RMAPPAQAPMAPAPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=454830 HUK68_RS00270 WP_175502384.1 53202..53774(-) (ssb) [Comamonas antarctica strain 16-35-5]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGCGATCCTGAAATGCGCGCCTTCCCCAGCGGTGACCA
GGTCGCCAACGTGACCATCGCCACCACCGACCGCTGGCGCGACAAGAACACCGGCGAGAACAAGGAAGCGACCGAATGGC
ACCGCGTGGTGTTCAACGGCCGCCTCGCCGAGATCGTCGGCCAGTACCTGCGCAAGGGCTCGCAGGTCTATGTCGAAGGC
TCGCTGCGCACGCGCAAGTGGACCGACCAGGCCACGGGCCAGGAACGCTACGCGACTGAAATCCGCGCCGACACCATGCA
GATGCTGGGCAGCCGCCAGGGCATGGGTGGCGGCCAGGGCGGCGGTTATGGCGACGACAGCGGCTATGGCGACAACGGTG
GCGGCAATGGCGGCGGCAACGGCGGCTACGAAGCCCCGCGCCGCGCCGCGCCCGCACCGCGCGCCGCGGCTCCGGCCCCG
CGCATGGCGCCTCCGGCCCAGGCACCGATGGCACCCGCGCCGCAGCGCGCGGCCTCGGGTTTCGACGATATGGATGACGA
TATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N1WWV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.739

100

0.542
  ssb Vibrio cholerae strain A1552

48.469

100

0.5
  ssb Neisseria gonorrhoeae MS11

44.503

100

0.447
  ssb Neisseria meningitidis MC58

42.105

100

0.421