Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HTY61_RS06895 Genome accession   NZ_CP054836
Coordinates   1426431..1426925 (-) Length   164 a.a.
NCBI ID   WP_175276096.1    Uniprot ID   A0A6N1VBA2
Organism   Oricola thermophila strain MEBiC13590     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1421431..1431925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY61_RS06875 (HTY61_06875) - 1421704..1422330 (-) 627 WP_175276093.1 LysE family translocator -
  HTY61_RS06880 (HTY61_06880) gyrA 1422395..1425199 (-) 2805 WP_175276094.1 DNA gyrase subunit A -
  HTY61_RS06885 (HTY61_06885) - 1425365..1426003 (+) 639 WP_175276095.1 MarC family protein -
  HTY61_RS06890 (HTY61_06890) - 1426007..1426417 (-) 411 WP_197945372.1 hypothetical protein -
  HTY61_RS06895 (HTY61_06895) ssb 1426431..1426925 (-) 495 WP_175276096.1 single-stranded DNA-binding protein Machinery gene
  HTY61_RS06900 (HTY61_06900) uvrA 1427180..1430098 (+) 2919 WP_175276097.1 excinuclease ABC subunit UvrA -
  HTY61_RS06905 (HTY61_06905) - 1430221..1430709 (+) 489 WP_175276098.1 Hsp20/alpha crystallin family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17995.76 Da        Isoelectric Point: 5.0657

>NTDB_id=454815 HTY61_RS06895 WP_175276096.1 1426431..1426925(-) (ssb) [Oricola thermophila strain MEBiC13590]
MAGSVNKVILVGNLGADPEVRRLNSGEPVVNLSVATSESWRDKNSGERRERTEWHRVVIFNENLAKVAENYLKKGSKVYV
EGQLQTRKWQDQSGQDRYTTEIVLQRFRGDLQMLDSRGEGEGGYGGGGGGRQQVGSYGAEQGGGQQPASGGSDFVRDMDD
EIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=454815 HTY61_RS06895 WP_175276096.1 1426431..1426925(-) (ssb) [Oricola thermophila strain MEBiC13590]
ATGGCTGGCAGCGTGAACAAGGTAATTCTCGTCGGCAATCTGGGCGCCGACCCGGAAGTGCGTCGACTCAATTCGGGCGA
ACCGGTGGTGAACCTGTCGGTGGCGACGTCGGAAAGCTGGCGGGACAAGAATTCCGGCGAGCGGCGCGAGCGTACGGAAT
GGCACAGGGTCGTCATTTTCAACGAGAACCTGGCGAAGGTGGCGGAGAACTATCTGAAGAAGGGCTCCAAGGTCTATGTC
GAGGGCCAGTTGCAGACGCGCAAGTGGCAGGACCAGAGCGGACAGGACCGATATACCACGGAAATCGTGCTGCAGCGTTT
CCGCGGCGACCTGCAGATGCTCGACAGCCGGGGTGAAGGCGAGGGCGGCTACGGCGGTGGCGGTGGTGGCCGGCAGCAGG
TGGGCAGCTACGGTGCCGAGCAGGGAGGAGGGCAGCAGCCTGCTTCCGGCGGCAGCGACTTCGTCCGCGACATGGACGAC
GAAATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N1VBA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.66

100

0.604
  ssb Vibrio cholerae strain A1552

52.299

100

0.555
  ssb Neisseria meningitidis MC58

43.094

100

0.476
  ssb Neisseria gonorrhoeae MS11

42.541

100

0.47