Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G9X25_RS20505 Genome accession   NZ_CP054827
Coordinates   4244100..4244630 (-) Length   176 a.a.
NCBI ID   WP_000168322.1    Uniprot ID   -
Organism   Salmonella enterica subsp. enterica serovar Adjame strain 389598     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4239100..4249630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9X25_RS20490 (G9X25_20490) siiC 4239585..4240904 (-) 1320 WP_001670706.1 SPI-4 type I secretion system protein SiiC -
  G9X25_RS20495 (G9X25_20495) - 4240894..4242282 (-) 1389 WP_080108906.1 MotA/TolQ/ExbB proton channel family protein -
  G9X25_RS20500 (G9X25_20500) siiA 4242279..4242911 (-) 633 WP_023200692.1 SPI-4 type I secretion system auxiliary protein SiiA -
  G9X25_RS20505 (G9X25_20505) ssb 4244100..4244630 (-) 531 WP_000168322.1 single-stranded DNA-binding protein SSB1 Machinery gene
  G9X25_RS20510 (G9X25_20510) uvrA 4244878..4247703 (+) 2826 WP_000357722.1 excinuclease ABC subunit UvrA -
  G9X25_RS20515 (G9X25_20515) - 4247835..4248290 (+) 456 WP_079981292.1 hypothetical protein -
  G9X25_RS20520 (G9X25_20520) - 4248277..4248615 (+) 339 WP_000146597.1 hypothetical protein -
  G9X25_RS20525 (G9X25_20525) - 4248616..4248972 (-) 357 WP_000155665.1 MmcQ/YjbR family DNA-binding protein -
  G9X25_RS20530 (G9X25_20530) - 4248975..4249391 (-) 417 WP_000270392.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19074.15 Da        Isoelectric Point: 5.2456

>NTDB_id=454770 G9X25_RS20505 WP_000168322.1 4244100..4244630(-) (ssb) [Salmonella enterica subsp. enterica serovar Adjame strain 389598]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDKQTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQERYTTEINVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=454770 G9X25_RS20505 WP_000168322.1 4244100..4244630(-) (ssb) [Salmonella enterica subsp. enterica serovar Adjame strain 389598]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTTGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAGTGG
CGGCGCTGTCGCCAACTTAACGCTGGCTACTTCTGAATCCTGGCGCGATAAGCAGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGGGTGGTGATGTTCGGCAAACTGGCGGAAGTGGCCGGCGAATATCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGTCAATTGCGTACCCGCAAGTGGACCGATCAGAGTGGCCAGGAACGCTATACGACTGAAATTAACGTTCCGCAGAT
CGGCGGCGTAATGCAGATGCTGGGTGGTCGCCAGGGCGGCGGCGCACCGGCAGGCGGTCAGCAGCAGGGGGGGTGGGGTC
AACCGCAACAACCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCGCGTCCACAGCAATCCGCGCCA
GCGCCGTCTAACGAACCGCCAATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.978

100

0.744
  ssb Glaesserella parasuis strain SC1401

60.109

100

0.625
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.483
  ssb Neisseria meningitidis MC58

46.409

100

0.477