Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUK78_RS03635 Genome accession   NZ_CP054794
Coordinates   753161..753658 (+) Length   165 a.a.
NCBI ID   WP_235175880.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain A0002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 748161..758658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK78_RS03620 (HUK78_03620) bfr 748170..748634 (+) 465 WP_003093668.1 bacterioferritin -
  HUK78_RS03625 (HUK78_03625) uvrA 748705..751542 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA -
  HUK78_RS03630 (HUK78_03630) - 751756..753144 (+) 1389 WP_003103910.1 MFS transporter -
  HUK78_RS03635 (HUK78_03635) ssb 753161..753658 (+) 498 WP_235175880.1 single-stranded DNA-binding protein Machinery gene
  HUK78_RS03640 (HUK78_03640) - 753791..755077 (+) 1287 WP_014602450.1 tyrosine-type recombinase/integrase -
  HUK78_RS03645 (HUK78_03645) - 755070..756632 (+) 1563 WP_014602451.1 site-specific integrase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18535.41 Da        Isoelectric Point: 5.2781

>NTDB_id=454722 HUK78_RS03635 WP_235175880.1 753161..753658(+) (ssb) [Pseudomonas aeruginosa strain A0002]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPRETMQRPQQAPQQQSRPAPQQQPAAQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=454722 HUK78_RS03635 WP_235175880.1 753161..753658(+) (ssb) [Pseudomonas aeruginosa strain A0002]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGACCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAACAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGGCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.523

100

0.624
  ssb Glaesserella parasuis strain SC1401

53.591

100

0.588
  ssb Neisseria meningitidis MC58

49.438

100

0.533
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.527