Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   JEY30_RS19315 Genome accession   NZ_CP066351
Coordinates   4099528..4100202 (+) Length   224 a.a.
NCBI ID   WP_014496705.1    Uniprot ID   A0AAE5X3G4
Organism   Bradyrhizobium japonicum strain S06B-BJ     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4094528..4105202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JEY30_RS52070 - 4096104..4096328 (-) 225 WP_346737162.1 hypothetical protein -
  JEY30_RS19290 (JEY30_19120) - 4096875..4097039 (-) 165 WP_014496710.1 Flp family type IVb pilin -
  JEY30_RS19295 (JEY30_19125) - 4097257..4097436 (-) 180 WP_028159669.1 hypothetical protein -
  JEY30_RS19300 (JEY30_19130) - 4097634..4097870 (-) 237 WP_038931638.1 hypothetical protein -
  JEY30_RS19305 (JEY30_19135) - 4097931..4098905 (-) 975 WP_038931639.1 Ku protein -
  JEY30_RS19310 (JEY30_19140) - 4099141..4099296 (+) 156 WP_014496706.1 hypothetical protein -
  JEY30_RS19315 (JEY30_19145) ciaR 4099528..4100202 (+) 675 WP_014496705.1 response regulator transcription factor Regulator
  JEY30_RS19320 (JEY30_19150) - 4100295..4101671 (+) 1377 WP_038956241.1 sensor histidine kinase -
  JEY30_RS19325 (JEY30_19155) - 4101832..4103235 (+) 1404 WP_038956242.1 hypothetical protein -
  JEY30_RS19330 (JEY30_19160) - 4103335..4103604 (+) 270 WP_014496702.1 hypothetical protein -
  JEY30_RS19335 (JEY30_19165) ccmI 4103737..4104846 (+) 1110 WP_014496701.1 c-type cytochrome biogenesis protein CcmI -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25105.47 Da        Isoelectric Point: 6.1554

>NTDB_id=454680 JEY30_RS19315 WP_014496705.1 4099528..4100202(+) (ciaR) [Bradyrhizobium japonicum strain S06B-BJ]
MRLLVVEDDPDLNRQLTKALTDAGYVVDRAFDGEEGHYLGDNEPYDAVVLDIGLPKKDGISVLEAWRRNGRTMPVLILTA
RDRWSDKVQGFDAGADDYVPKPFHLEEVLARIRALLRRSTGHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAY
LMHHSGRVVSRTELVEHLYDQDFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLLTPPPAPGA

Nucleotide


Download         Length: 675 bp        

>NTDB_id=454680 JEY30_RS19315 WP_014496705.1 4099528..4100202(+) (ciaR) [Bradyrhizobium japonicum strain S06B-BJ]
GTGCGCCTGCTTGTTGTTGAGGACGACCCTGATCTCAATCGCCAGCTCACCAAGGCGCTGACGGACGCCGGCTATGTCGT
CGACCGCGCCTTCGACGGAGAGGAGGGGCACTATCTCGGCGACAACGAGCCCTACGATGCCGTTGTGCTCGACATCGGCC
TGCCGAAGAAGGACGGCATCTCGGTGCTGGAAGCCTGGCGCCGCAACGGCCGCACCATGCCGGTCCTGATCCTCACCGCC
CGCGACCGCTGGAGCGACAAGGTCCAGGGGTTCGATGCCGGCGCCGACGATTACGTGCCGAAGCCGTTCCATCTGGAGGA
GGTGCTGGCGCGCATCCGCGCGCTGCTGCGCCGCTCCACCGGCCATGCCCAGAGCGAATTGAGTTGCGGCCCCGTCACGC
TCGACACCAGGACCGGGCGGGTCAGCGTCTCCGGCAATCCCGTCAAGATGACCTCGCACGAATATCGGCTTCTGGCCTAT
TTGATGCACCATTCGGGGCGCGTCGTGTCCCGCACCGAGCTGGTCGAACACCTCTACGACCAGGACTTCGACCGCGACTC
CAACACCATCGAGGTCTTCGTCGGCCGCATCCGCAAGAAGCTCGATGTCGACATCATCCAGACCGTCCGCGGCCTCGGCT
ATCTCCTGACCCCGCCGCCTGCTCCCGGCGCTTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAE5X3G4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus mutans UA159

40

98.214

0.393
  ciaR Streptococcus pneumoniae Rx1

39.091

98.214

0.384
  ciaR Streptococcus pneumoniae D39

39.091

98.214

0.384
  ciaR Streptococcus pneumoniae R6

39.091

98.214

0.384
  ciaR Streptococcus pneumoniae TIGR4

39.091

98.214

0.384
  covR Lactococcus lactis subsp. lactis strain DGCC12653

36.323

99.554

0.362