Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HUK71_RS27310 Genome accession   NZ_CP054790
Coordinates   5702195..5703532 (+) Length   445 a.a.
NCBI ID   WP_235200874.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SE5418     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5697195..5708532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK71_RS27285 (HUK71_27160) pgeF 5697338..5698066 (-) 729 WP_003102588.1 peptidoglycan editing factor PgeF -
  HUK71_RS27290 (HUK71_27165) rluD 5698063..5699025 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HUK71_RS27295 (HUK71_27170) - 5699171..5700196 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  HUK71_RS27300 (HUK71_27175) - 5700353..5700598 (+) 246 WP_003102591.1 PP0621 family protein -
  HUK71_RS27305 (HUK71_27180) pilS 5700588..5702180 (+) 1593 WP_003123394.1 two-component system sensor histidine kinase PilS Regulator
  HUK71_RS27310 (HUK71_27185) pilR 5702195..5703532 (+) 1338 WP_235200874.1 two-component system response regulator PilR Regulator
  HUK71_RS27315 (HUK71_27190) thiO 5703578..5704672 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  HUK71_RS27320 (HUK71_27195) - 5704807..5705316 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  HUK71_RS27325 (HUK71_27200) - 5705422..5705928 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HUK71_RS27330 (HUK71_27205) pilV 5705919..5706476 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  HUK71_RS27335 (HUK71_27210) pilW 5706473..5707297 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  HUK71_RS27340 (HUK71_27215) pilX 5707294..5707881 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49709.01 Da        Isoelectric Point: 5.8654

>NTDB_id=454609 HUK71_RS27310 WP_235200874.1 5702195..5703532(+) (pilR) [Pseudomonas aeruginosa strain SE5418]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLAQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=454609 HUK71_RS27310 WP_235200874.1 5702195..5703532(+) (pilR) [Pseudomonas aeruginosa strain SE5418]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGCCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

50.98

100

0.526
  luxO Vibrio cholerae strain A1552

38.17

100

0.384