Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IGS65_RS07070 Genome accession   NZ_CP066294
Coordinates   1427260..1428528 (+) Length   422 a.a.
NCBI ID   WP_002274643.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1422260..1433528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS07035 (IGS65_007035) - 1423346..1423540 (+) 195 Protein_1378 hypothetical protein -
  IGS65_RS07040 (IGS65_007040) - 1423568..1423864 (-) 297 WP_002284622.1 LacI family DNA-binding transcriptional regulator -
  IGS65_RS07045 (IGS65_007045) - 1423926..1424669 (-) 744 WP_002276297.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  IGS65_RS07050 (IGS65_007050) prmA 1424670..1425623 (-) 954 WP_192072422.1 50S ribosomal protein L11 methyltransferase -
  IGS65_RS07055 (IGS65_007055) - 1425852..1426148 (-) 297 WP_002272503.1 LlsX family protein -
  IGS65_RS07060 (IGS65_007060) - 1426161..1426631 (-) 471 WP_002266253.1 DUF3013 family protein -
  IGS65_RS07065 (IGS65_007065) - 1426779..1427270 (+) 492 WP_002268302.1 GNAT family N-acetyltransferase -
  IGS65_RS07070 (IGS65_007070) rarA 1427260..1428528 (+) 1269 WP_002274643.1 replication-associated recombination protein A Machinery gene
  IGS65_RS07085 (IGS65_007085) - 1428932..1430848 (-) 1917 WP_172964897.1 heavy metal translocating P-type ATPase -
  IGS65_RS07090 (IGS65_007090) - 1430947..1431741 (+) 795 WP_002270090.1 helix-turn-helix domain-containing protein -
  IGS65_RS07095 (IGS65_007095) - 1431910..1432935 (-) 1026 WP_002270089.1 YeiH family protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46498.87 Da        Isoelectric Point: 6.5109

>NTDB_id=454610 IGS65_RS07070 WP_002274643.1 1427260..1428528(+) (rarA) [Streptococcus mutans strain 27-3]
MPNNLALRMRPRDISEVIGQKHLVGQGKIISRMVTANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATTDTKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGQIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAMQ
VALTDTERGFDFEVKLDDDALDFIAQATNGDLRSAYNSLDLAIMSTQPDDNGSRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTIIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYVAMDKAIADLHKSGTIPIPRHLRDGHYAGSKELGNAQDYLYPHAYPEKWVKQQYLPDKLKGANYFTA
NETGKYERALGANKSKIDQLSQ

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=454610 IGS65_RS07070 WP_002274643.1 1427260..1428528(+) (rarA) [Streptococcus mutans strain 27-3]
ATGCCAAATAACCTCGCACTTCGTATGCGCCCTCGAGATATCTCTGAAGTTATCGGACAAAAGCATCTAGTCGGTCAAGG
CAAGATTATTTCGCGAATGGTCACTGCTAACCGTCTGTCTTCCATGATTCTTTATGGCCCTCCGGGAATTGGAAAAACCT
CAATCGCTTCTGCCATCGCTGGTACAACCAAATTTGCCTTTCGTACCTTCAATGCAACAACCGACACTAAAAAACGCCTA
CAGGAAATTGCTGAAGAAGCTAAATTTTCAGGTGGTTTGGTTTTACTCCTAGATGAAATTCATCGTCTAGATAAAACTAA
GCAAGATTTTCTTCTCCCCTTGTTGGAAAACGGACAAATTATCATGATTGGCGCAACCACTGAAAATCCCTTTTTCTCTG
TCACCCCTGCCATTCGCTCGCGTGTTCAGATTTTTGAATTAGAGCCATTATCAAATGAGGATATCAAAAAAGCTATGCAA
GTAGCTCTGACAGATACAGAGCGCGGTTTTGATTTTGAAGTCAAATTAGATGATGATGCTCTTGACTTCATTGCGCAAGC
CACCAATGGCGACTTGCGCTCTGCCTATAATTCTCTTGATTTAGCTATCATGTCCACCCAGCCAGATGACAATGGTAGTC
GCCACATCACCTTAGACACTGTTGAAAACAGCCTACAGCGCAGCTACATTACCATGGACAAGGATGGTGATGGCCACTAT
GATGTCTTGTCCGCCTTACAAAAATCTATTCGCGGTTCAGATGTCAATGCCAGCCTTCACTATGCTGCCAGATTAATCGA
AGCTGGTGATCTGCCAAGTCTAGCTAGACGTTTAACCATTATTGCTTACGAAGATATCGGCTTAGCCAATCCTGATGCAC
AGATTCATACAGTGACAGCGCTGGAAGCAGCCCAAAAAATTGGTTTTCCTGAAGCCCGCATTTTAATTGCCAATGTGGTT
ATTGATTTAGCACTCTCACCTAAGTCTAATTCCGCTTATGTTGCTATGGACAAGGCCATTGCAGATCTTCATAAGAGCGG
CACGATCCCTATTCCTCGCCACTTGCGTGATGGTCATTACGCTGGCAGTAAAGAATTGGGCAATGCCCAAGATTATCTCT
ACCCGCATGCCTATCCGGAAAAATGGGTTAAGCAGCAATATTTACCAGACAAACTCAAAGGAGCTAACTATTTTACTGCC
AATGAAACAGGTAAATACGAACGGGCATTAGGAGCTAATAAGAGTAAGATTGACCAGCTCTCCCAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.705

96.445

0.576