Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   IGS65_RS05430 Genome accession   NZ_CP066294
Coordinates   1110992..1111657 (-) Length   221 a.a.
NCBI ID   WP_002270131.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1105992..1116657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS05410 (IGS65_005410) - 1106712..1107347 (+) 636 WP_002285302.1 hypothetical protein -
  IGS65_RS05415 (IGS65_005415) - 1107427..1109127 (-) 1701 WP_192072089.1 hypothetical protein -
  IGS65_RS05420 (IGS65_005420) - 1109147..1110241 (-) 1095 WP_168745521.1 hypothetical protein -
  IGS65_RS05425 (IGS65_005425) raiA 1110365..1110913 (-) 549 WP_002263024.1 ribosome-associated translation inhibitor RaiA -
  IGS65_RS05430 (IGS65_005430) comFC/cflB 1110992..1111657 (-) 666 WP_002270131.1 ComF family protein Machinery gene
  IGS65_RS05435 (IGS65_005435) comFA/cflA 1111654..1112955 (-) 1302 WP_002264401.1 DEAD/DEAH box helicase Machinery gene
  IGS65_RS05440 (IGS65_005440) - 1113028..1113657 (+) 630 WP_002267951.1 YigZ family protein -
  IGS65_RS05445 (IGS65_005445) cysK 1113748..1114674 (+) 927 WP_002263028.1 cysteine synthase A -
  IGS65_RS05450 (IGS65_005450) - 1115008..1116099 (-) 1092 WP_002267044.1 glycerol dehydrogenase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26031.08 Da        Isoelectric Point: 8.9825

>NTDB_id=454590 IGS65_RS05430 WP_002270131.1 1110992..1111657(-) (comFC/cflB) [Streptococcus mutans strain 27-3]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPIKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=454590 IGS65_RS05430 WP_002270131.1 1110992..1111657(-) (comFC/cflB) [Streptococcus mutans strain 27-3]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTTTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTATTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCTTTTTCTTTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448
  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443
  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439