Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   IGS65_RS05235 Genome accession   NZ_CP066294
Coordinates   1074481..1075137 (+) Length   218 a.a.
NCBI ID   WP_024782998.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1069481..1080137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS05205 (IGS65_005205) - 1069717..1069971 (-) 255 WP_002262064.1 DUF3165 family protein -
  IGS65_RS05210 (IGS65_005210) typA 1070000..1071844 (-) 1845 WP_024783000.1 translational GTPase TypA -
  IGS65_RS05215 (IGS65_005215) - 1072077..1072466 (-) 390 WP_002262062.1 rhodanese-like domain-containing protein -
  IGS65_RS05220 (IGS65_005220) - 1072476..1073447 (-) 972 WP_002268857.1 ROK family glucokinase -
  IGS65_RS05225 (IGS65_005225) - 1073440..1073646 (-) 207 WP_002262060.1 YqgQ family protein -
  IGS65_RS05230 (IGS65_005230) dpr 1073853..1074380 (-) 528 WP_002266317.1 DNA starvation/stationary phase protection protein -
  IGS65_RS05235 (IGS65_005235) cclA/cilC 1074481..1075137 (+) 657 WP_024782998.1 A24 family peptidase Machinery gene
  IGS65_RS05240 (IGS65_005240) trpA 1075374..1076156 (-) 783 WP_002264437.1 tryptophan synthase subunit alpha -
  IGS65_RS05245 (IGS65_005245) trpB 1076160..1077371 (-) 1212 WP_088724027.1 tryptophan synthase subunit beta -
  IGS65_RS05250 (IGS65_005250) - 1077368..1077949 (-) 582 WP_002262055.1 phosphoribosylanthranilate isomerase -
  IGS65_RS05255 (IGS65_005255) trpC 1077936..1078703 (-) 768 WP_002262054.1 indole-3-glycerol phosphate synthase TrpC -
  IGS65_RS05260 (IGS65_005260) trpD 1078696..1079703 (-) 1008 WP_192072097.1 anthranilate phosphoribosyltransferase -

Sequence


Protein


Download         Length: 218 a.a.        Molecular weight: 24893.10 Da        Isoelectric Point: 8.5763

>NTDB_id=454587 IGS65_RS05235 WP_024782998.1 1074481..1075137(+) (cclA/cilC) [Streptococcus mutans strain 27-3]
MKLILFFMLGASFGSFFGLVVDRYPQKSIIFPRSHCNKCYNCLTMRDLIPIFSRIINKNSCRFCGYPIPLRYSLVELLCG
LISTGFALDLLTTSQVCLLFMGVLLSLYDLQDQSYPLTLWIGFTFLLMFIYPLNLISLILFLFGIFAALKNINIGSGDFL
YLATLALSINLQQIIWIIQIASLLGILYSLLFQKHKEPFAFVPFLFLGHLIIIFSHLI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=454587 IGS65_RS05235 WP_024782998.1 1074481..1075137(+) (cclA/cilC) [Streptococcus mutans strain 27-3]
ATGAAACTTATTTTATTTTTTATGTTGGGAGCTTCTTTTGGCTCTTTCTTTGGCTTAGTTGTTGATCGTTACCCTCAGAA
ATCTATTATATTTCCTAGAAGCCATTGCAATAAGTGTTATAACTGCTTAACCATGAGGGATCTTATCCCAATATTTTCAC
GAATCATCAACAAAAATTCTTGTCGCTTTTGCGGTTACCCTATTCCATTGCGTTATTCCTTGGTAGAATTACTCTGCGGA
CTGATTAGCACAGGTTTTGCTCTTGATTTATTAACCACTTCACAAGTATGTTTGCTCTTCATGGGAGTTCTTTTATCTCT
TTATGATTTACAAGATCAGTCTTATCCTTTGACACTGTGGATAGGCTTTACTTTTCTCTTAATGTTTATCTATCCTCTTA
ACCTAATTAGCTTAATTCTTTTTCTATTTGGTATTTTTGCTGCCCTCAAAAATATTAATATCGGAAGCGGTGATTTCCTC
TATCTGGCTACTTTGGCACTTTCTATTAATCTTCAGCAAATTATTTGGATTATTCAGATTGCCAGTTTATTAGGAATTCT
TTACAGCCTGCTTTTTCAAAAGCACAAAGAACCTTTTGCTTTTGTTCCTTTCTTATTCTTGGGTCACCTCATTATCATTT
TCTCTCACTTGATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

42.791

98.624

0.422

  cclA/cilC Streptococcus pneumoniae Rx1

42.254

97.706

0.413

  cclA/cilC Streptococcus pneumoniae D39

42.254

97.706

0.413

  cclA/cilC Streptococcus pneumoniae R6

42.254

97.706

0.413

  cclA/cilC Streptococcus mitis NCTC 12261

41.86

98.624

0.413

  cclA/cilC Streptococcus pneumoniae TIGR4

41.315

97.706

0.404