Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   IGS65_RS04770 Genome accession   NZ_CP066294
Coordinates   977227..978165 (-) Length   312 a.a.
NCBI ID   WP_192072124.1    Uniprot ID   -
Organism   Streptococcus mutans strain 27-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 972227..983165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS65_RS04750 (IGS65_004750) prsA 972749..973750 (-) 1002 WP_002284840.1 peptidylprolyl isomerase PrsA -
  IGS65_RS04755 (IGS65_004755) - 973812..974519 (-) 708 WP_002270611.1 O-methyltransferase -
  IGS65_RS04760 (IGS65_004760) - 974576..975193 (-) 618 WP_002261895.1 HAD-IA family hydrolase -
  IGS65_RS04765 (IGS65_004765) pepF 975406..977205 (-) 1800 WP_192072125.1 oligoendopeptidase F Regulator
  IGS65_RS04770 (IGS65_004770) coiA 977227..978165 (-) 939 WP_192072124.1 competence protein CoiA family protein Machinery gene
  IGS65_RS04775 (IGS65_004775) - 978472..979365 (-) 894 WP_192072123.1 alpha/beta hydrolase -
  IGS65_RS04780 (IGS65_004780) - 979471..979752 (-) 282 WP_192072122.1 hypothetical protein -
  IGS65_RS04785 (IGS65_004785) - 979837..979964 (+) 128 Protein_948 transcriptional regulator -
  IGS65_RS04790 (IGS65_004790) - 979997..980965 (-) 969 WP_002261900.1 zinc-binding dehydrogenase -
  IGS65_RS04795 (IGS65_004795) - 981093..982466 (+) 1374 WP_192072121.1 PLP-dependent aminotransferase family protein -
  IGS65_RS04800 (IGS65_004800) - 982556..983056 (-) 501 WP_192072120.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 312 a.a.        Molecular weight: 36696.11 Da        Isoelectric Point: 9.1986

>NTDB_id=454580 IGS65_RS04770 WP_192072124.1 977227..978165(-) (coiA) [Streptococcus mutans strain 27-3]
MLVARDKNGKLINLLNGIPNKSDFYCPACQSPVRLKNGRVMRPHFAHVALQDCKFYSENESAEHLNLKAELYQSLSQTES
VEIEKVMPEPEQIADLLVNHNLAVEVQCSRLSEARLCERTQAYQANGYQVLWLLGEKLWLDRRLSSLHKQFLYFSQNMGF
HLWELDINRRELRLKYLIYEDIFGKVYYQTRSCSFDGNIMTFLQLPYAKQTLTSYPVHQRRQVGLAIQKQLLARNPRWLR
QQELAYSQGRNLIAQSDADFFPQVRLPQCSRGFCQINQDVSHFSAAFFQYYQKQKDKKIQTLYPPAFYDKMK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=454580 IGS65_RS04770 WP_192072124.1 977227..978165(-) (coiA) [Streptococcus mutans strain 27-3]
ATGTTAGTTGCAAGGGATAAAAATGGAAAGTTGATTAATCTTCTGAATGGTATTCCTAACAAAAGTGATTTTTATTGTCC
TGCCTGCCAATCGCCTGTACGTCTCAAAAACGGCAGGGTTATGCGTCCGCATTTTGCCCATGTTGCTTTGCAAGACTGCA
AATTTTACAGTGAAAATGAGTCCGCTGAACACCTAAACTTGAAAGCAGAACTCTATCAGTCATTATCTCAGACGGAAAGT
GTTGAGATCGAAAAAGTCATGCCAGAACCTGAACAAATCGCAGACTTATTAGTTAATCATAACCTAGCAGTAGAAGTTCA
GTGTTCTCGCTTGTCCGAAGCTCGTCTGTGTGAGCGAACGCAGGCCTATCAGGCCAATGGTTATCAGGTACTGTGGCTGC
TTGGGGAGAAACTCTGGTTGGATAGGCGTTTATCCAGCTTGCACAAACAATTTCTTTACTTTTCACAAAATATGGGCTTT
CATCTTTGGGAATTAGATATTAATAGGCGTGAGTTGCGACTTAAGTACTTGATTTATGAAGATATTTTTGGCAAAGTCTA
TTATCAAACGAGGTCTTGTTCTTTTGATGGTAATATCATGACCTTTTTACAATTGCCCTATGCTAAGCAAACCTTGACTT
CTTATCCTGTTCACCAGCGCAGGCAGGTTGGTTTAGCCATTCAAAAACAACTGCTAGCACGCAATCCGCGTTGGCTGCGT
CAGCAAGAACTTGCTTATTCACAGGGGCGTAATCTGATAGCACAATCAGATGCTGATTTTTTCCCGCAGGTAAGGTTACC
GCAATGTTCAAGAGGCTTTTGTCAAATCAATCAGGATGTATCTCATTTTAGCGCAGCTTTTTTTCAATATTATCAAAAGC
AAAAAGACAAAAAAATTCAAACACTGTATCCGCCAGCCTTTTATGATAAAATGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

46.926

99.038

0.465

  coiA Streptococcus pneumoniae Rx1

45.955

99.038

0.455

  coiA Streptococcus pneumoniae D39

45.955

99.038

0.455

  coiA Streptococcus pneumoniae R6

45.955

99.038

0.455

  coiA Streptococcus pneumoniae TIGR4

45.631

99.038

0.452

  coiA Lactococcus lactis subsp. cremoris KW2

39.319

100

0.407