Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HUK69_RS26385 Genome accession   NZ_CP054788
Coordinates   5537082..5538419 (+) Length   445 a.a.
NCBI ID   WP_017002067.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain YTSY4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5532082..5543419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK69_RS26360 (HUK69_26325) pgeF 5532225..5532953 (-) 729 WP_003102588.1 peptidoglycan editing factor PgeF -
  HUK69_RS26365 (HUK69_26330) rluD 5532950..5533912 (-) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HUK69_RS26370 (HUK69_26335) - 5534058..5535083 (+) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  HUK69_RS26375 (HUK69_26340) - 5535240..5535485 (+) 246 WP_003102591.1 PP0621 family protein -
  HUK69_RS26380 (HUK69_26345) pilS 5535475..5537067 (+) 1593 WP_003094692.1 two-component system sensor histidine kinase PilS Regulator
  HUK69_RS26385 (HUK69_26350) pilR 5537082..5538419 (+) 1338 WP_017002067.1 two-component system response regulator PilR Regulator
  HUK69_RS26390 (HUK69_26355) thiO 5538465..5539559 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  HUK69_RS26395 (HUK69_26360) - 5539694..5540203 (+) 510 WP_070743515.1 Tfp pilus assembly protein FimT/FimU -
  HUK69_RS26400 (HUK69_26365) - 5540309..5540815 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HUK69_RS26405 (HUK69_26370) pilV 5540806..5541363 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  HUK69_RS26410 (HUK69_26375) pilW 5541360..5542184 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  HUK69_RS26415 (HUK69_26380) pilX 5542181..5542768 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49727.02 Da        Isoelectric Point: 5.8654

>NTDB_id=454538 HUK69_RS26385 WP_017002067.1 5537082..5538419(+) (pilR) [Pseudomonas aeruginosa strain YTSY4]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLARESFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=454538 HUK69_RS26385 WP_017002067.1 5537082..5538419(+) (pilR) [Pseudomonas aeruginosa strain YTSY4]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGTCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384