Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HUK69_RS26405 Genome accession   NZ_CP054788
Coordinates   5540806..5541363 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain YTSY4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5535806..5546363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK69_RS26385 (HUK69_26350) pilR 5537082..5538419 (+) 1338 WP_017002067.1 two-component system response regulator PilR Regulator
  HUK69_RS26390 (HUK69_26355) thiO 5538465..5539559 (-) 1095 WP_023108762.1 glycine oxidase ThiO -
  HUK69_RS26395 (HUK69_26360) - 5539694..5540203 (+) 510 WP_070743515.1 Tfp pilus assembly protein FimT/FimU -
  HUK69_RS26400 (HUK69_26365) - 5540309..5540815 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  HUK69_RS26405 (HUK69_26370) pilV 5540806..5541363 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  HUK69_RS26410 (HUK69_26375) pilW 5541360..5542184 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  HUK69_RS26415 (HUK69_26380) pilX 5542181..5542768 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  HUK69_RS26420 (HUK69_26385) pilY1 5542780..5546265 (+) 3486 WP_034003229.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=454539 HUK69_RS26405 WP_003094697.1 5540806..5541363(+) (pilV) [Pseudomonas aeruginosa strain YTSY4]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=454539 HUK69_RS26405 WP_003094697.1 5540806..5541363(+) (pilV) [Pseudomonas aeruginosa strain YTSY4]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAAGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACATCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978