Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I33_RS19820 Genome accession   NC_017195
Coordinates   3995228..3995746 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3990228..4000746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS19790 (I33_4254) yyaJ 3990732..3992087 (+) 1356 WP_014478567.1 MFS transporter -
  I33_RS19795 (I33_4255) maa 3992121..3992675 (-) 555 WP_014478568.1 sugar O-acetyltransferase -
  I33_RS19800 (I33_4256) yyaH 3992691..3993071 (-) 381 WP_014478569.1 VOC family protein -
  I33_RS19805 (I33_4257) ccpB 3993139..3994062 (-) 924 WP_014478570.1 transcriptional regulator CcpB -
  I33_RS19810 (I33_4258) xth 3994122..3994880 (-) 759 WP_014478571.1 exodeoxyribonuclease III -
  I33_RS19815 rpsR 3994945..3995184 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  I33_RS19820 (I33_4259) ssbA 3995228..3995746 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  I33_RS19825 (I33_4260) rpsF 3995787..3996074 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  I33_RS19830 (I33_4261) ychF 3996185..3997285 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  I33_RS19835 (I33_4262) yyaE 3997412..3999415 (-) 2004 WP_014478572.1 molybdopterin-dependent oxidoreductase -
  I33_RS19840 (I33_4263) yyzM 3999466..3999672 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=45451 I33_RS19820 WP_003219228.1 3995228..3995746(-) (ssbA) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=45451 I33_RS19820 WP_003219228.1 3995228..3995746(-) (ssbA) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment