Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CPBP_RS00710 Genome accession   NZ_CP054719
Coordinates   149298..149813 (+) Length   171 a.a.
NCBI ID   WP_350332144.1    Uniprot ID   A0A7L9RS67
Organism   Candidatus Bodocaedibacter vickermanii isolate Lake Konstanz     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 144298..154813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPBP_RS00695 (CPBP_00140) abc-f 145266..146843 (+) 1578 WP_350332141.1 ribosomal protection-like ABC-F family protein -
  CPBP_RS00700 (CPBP_00141) fmt 146995..147933 (-) 939 WP_350332142.1 methionyl-tRNA formyltransferase -
  CPBP_RS00705 (CPBP_00142) - 148243..149142 (-) 900 WP_350332143.1 hypothetical protein -
  CPBP_RS00710 (CPBP_00143) ssb 149298..149813 (+) 516 WP_350332144.1 single-stranded DNA-binding protein Machinery gene
  CPBP_RS00715 (CPBP_00144) gyrA 149842..152547 (+) 2706 WP_350332145.1 DNA gyrase subunit A -
  CPBP_RS00720 (CPBP_00146) - 153276..153791 (-) 516 WP_350332146.1 hypothetical protein -
  CPBP_RS00725 (CPBP_00147) - 154060..154494 (-) 435 WP_350332147.1 DNA polymerase III subunit chi -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18697.61 Da        Isoelectric Point: 5.9569

>NTDB_id=454180 CPBP_RS00710 WP_350332144.1 149298..149813(+) (ssb) [Candidatus Bodocaedibacter vickermanii isolate Lake Konstanz]
MAGSINKVTLIGNLGADPEVRMGQDSSKIVTFSVATSEFWNDKQSGERKEKTEWHRVVIFNDRIAEVAEKYLRKGSKVYL
EGQLQTRQWKDNTGVDRYTTEVVISRFKGELVLIDSRNGSSGGGDSFGADNGFSSGSSSSGFGGQSMQQASRPSTQAQPK
NSFGIDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=454180 CPBP_RS00710 WP_350332144.1 149298..149813(+) (ssb) [Candidatus Bodocaedibacter vickermanii isolate Lake Konstanz]
ATGGCTGGAAGTATTAACAAAGTGACGTTGATAGGAAACTTAGGGGCAGATCCCGAAGTTCGTATGGGGCAAGATAGTTC
TAAAATCGTTACGTTCTCAGTTGCGACCTCTGAATTTTGGAATGATAAGCAAAGCGGAGAACGCAAAGAAAAAACCGAAT
GGCATCGCGTTGTGATTTTCAACGATCGCATTGCCGAGGTTGCAGAAAAGTATTTGCGCAAAGGATCTAAAGTTTATTTA
GAAGGTCAGCTTCAAACACGTCAATGGAAAGATAATACTGGCGTTGATCGTTACACCACAGAAGTTGTGATTTCTCGATT
TAAGGGTGAGTTGGTTTTGATTGATAGCCGCAATGGATCATCAGGCGGCGGTGACTCTTTTGGAGCGGATAATGGATTTT
CATCTGGGTCAAGTTCATCTGGATTCGGTGGTCAATCTATGCAACAAGCATCGAGGCCCTCAACGCAAGCACAGCCAAAA
AATAGTTTTGGCATTGATGATGAAATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L9RS67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.52
  ssb Vibrio cholerae strain A1552

46.552

100

0.474
  ssb Neisseria meningitidis MC58

37.989

100

0.398
  ssb Neisseria gonorrhoeae MS11

36.066

100

0.386