Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HUG15_RS22595 Genome accession   NZ_CP054705
Coordinates   4481822..4482322 (-) Length   166 a.a.
NCBI ID   WP_200126070.1    Uniprot ID   A0A7T7CDK4
Organism   Salicibibacter cibarius strain NKC5-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4476822..4487322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG15_RS22575 (HUG15_22545) rplI 4477985..4478431 (-) 447 WP_200126062.1 50S ribosomal protein L9 -
  HUG15_RS22580 (HUG15_22550) - 4478428..4480398 (-) 1971 WP_200126064.1 DHH family phosphoesterase -
  HUG15_RS22585 (HUG15_22555) - 4480410..4481351 (-) 942 WP_200126066.1 YybS family protein -
  HUG15_RS22590 (HUG15_22560) rpsR 4481550..4481777 (-) 228 WP_200126068.1 30S ribosomal protein S18 -
  HUG15_RS22595 (HUG15_22565) ssbA 4481822..4482322 (-) 501 WP_200126070.1 single-stranded DNA-binding protein Machinery gene
  HUG15_RS22600 (HUG15_22570) rpsF 4482354..4482641 (-) 288 WP_200126072.1 30S ribosomal protein S6 -
  HUG15_RS22605 (HUG15_22575) - 4482947..4486018 (+) 3072 WP_211202307.1 ATP-binding protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18264.02 Da        Isoelectric Point: 4.8333

>NTDB_id=454077 HUG15_RS22595 WP_200126070.1 4481822..4482322(-) (ssbA) [Salicibibacter cibarius strain NKC5-3]
MINRVVLVGRLTRDPELRYTPNGVAVANFGIAVNRPFTNQYGEREADFLNCVVWRKQAENVANYLKKGSQAGVDGRVQSR
SYENREGRRVNVVEIQAESVQFLEPRNVTANRGGDDQGVGAAPGPSNYQGNVGYGQEGQRHSADLNEDPISNDGKPVDIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=454077 HUG15_RS22595 WP_200126070.1 4481822..4482322(-) (ssbA) [Salicibibacter cibarius strain NKC5-3]
ATGATTAATCGCGTCGTGCTCGTTGGACGTCTCACGCGTGATCCGGAATTGCGCTACACCCCGAACGGGGTGGCGGTCGC
TAATTTCGGCATCGCCGTTAATCGTCCATTTACGAATCAGTATGGGGAACGGGAAGCGGACTTTTTGAACTGCGTCGTTT
GGAGAAAACAGGCGGAAAACGTCGCCAATTACTTGAAAAAAGGAAGTCAGGCAGGCGTAGACGGCCGCGTTCAAAGCCGC
AGTTATGAAAATCGGGAAGGACGACGTGTAAATGTCGTTGAAATACAAGCGGAAAGCGTCCAATTTTTGGAGCCTCGTAA
CGTTACCGCAAATCGGGGCGGGGACGACCAAGGAGTTGGAGCTGCTCCCGGGCCGTCCAATTACCAAGGAAACGTTGGAT
ATGGCCAAGAAGGGCAACGCCACTCCGCCGATTTGAATGAAGACCCTATCTCCAATGACGGGAAACCGGTCGATATTTCC
GACGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T7CDK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.791

100

0.651
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.542
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Neisseria meningitidis MC58

32.973

100

0.367