Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   JDY60_RS03305 Genome accession   NZ_CP066172
Coordinates   695226..695690 (+) Length   154 a.a.
NCBI ID   WP_001135769.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 690226..700690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS03270 (JDY60_03270) - 690500..691414 (+) 915 WP_200371401.1 peptidase -
  JDY60_RS03275 (JDY60_03275) - 691540..692082 (+) 543 WP_200371402.1 ClbS/DfsB family four-helix bundle protein -
  JDY60_RS03280 (JDY60_03280) - 692367..692870 (+) 504 WP_200371403.1 hypothetical protein -
  JDY60_RS03285 (JDY60_03285) - 692955..693371 (+) 417 WP_200371405.1 Imm70 family immunity protein -
  JDY60_RS03290 (JDY60_03290) - 693438..694130 (+) 693 WP_200371407.1 YjjG family noncanonical pyrimidine nucleotidase -
  JDY60_RS03295 (JDY60_03295) - 694154..694447 (+) 294 WP_000404134.1 hypothetical protein -
  JDY60_RS03300 (JDY60_03300) - 694563..695216 (+) 654 WP_001164849.1 uracil-DNA glycosylase -
  JDY60_RS03305 (JDY60_03305) mutX 695226..695690 (+) 465 WP_001135769.1 8-oxo-dGTP diphosphatase Machinery gene
  JDY60_RS03310 (JDY60_03310) - 695703..696971 (+) 1269 WP_200371409.1 dihydroorotase -
  JDY60_RS03315 (JDY60_03315) - 697013..698353 (+) 1341 WP_200371411.1 MATE family efflux transporter -
  JDY60_RS03320 (JDY60_03320) - 698531..699499 (+) 969 WP_000105351.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  JDY60_RS03325 (JDY60_03325) - 699516..700508 (+) 993 WP_000448704.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17811.22 Da        Isoelectric Point: 4.3273

>NTDB_id=453945 JDY60_RS03305 WP_001135769.1 695226..695690(+) (mutX) [Streptococcus oralis strain SF100]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=453945 JDY60_RS03305 WP_001135769.1 695226..695690(+) (mutX) [Streptococcus oralis strain SF100]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAACGGAAAAGAACTGCTCATGCTCCATCGCAATAAGAAGCCCAACGA
TGTCCATGAAGGCAAATGGATTGGTGTGGGTGGAAAGCTAGAGCGAGGTGAGACTCCACAGGAATGTGCAGCGCGTGAAA
TCCTCGAAGAGACAGGCCTCAAAGCCAAACCGGTTCTAAAAGGCGTTATCACTTTTCCAGAATTCACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGTGACTTGATTGACTGCAATGAGGGGACGCTGGAATGGGTTCC
CTATGATGAAGTCTTGAGCAAGCCAACTTGGGAAGGTGATCACACTTTTGTTGAGTGGCTTTTAGAAGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTATTGGATACCCAAGTGGATTTTTACAAGTAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.052

100

0.981