Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUR94_RS21145 Genome accession   NZ_CP054665
Coordinates   4326027..4326563 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain IGC_EcoliInv_1.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4321027..4331563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUR94_RS21125 aphA 4321316..4322029 (+) 714 WP_001226928.1 acid phosphatase AphA -
  HUR94_RS21130 yjbQ 4322140..4322556 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HUR94_RS21135 yjbR 4322560..4322916 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HUR94_RS21140 uvrA 4322951..4325773 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HUR94_RS21145 ssb 4326027..4326563 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUR94_RS21150 yjcB 4326662..4326943 (-) 282 WP_001295689.1 YjcB family protein -
  HUR94_RS21155 pdeC 4327373..4328959 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  HUR94_RS21160 soxS 4328962..4329285 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HUR94_RS21165 soxR 4329371..4329835 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=453945 HUR94_RS21145 WP_000168305.1 4326027..4326563(+) (ssb) [Escherichia coli strain IGC_EcoliInv_1.1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=453945 HUR94_RS21145 WP_000168305.1 4326027..4326563(+) (ssb) [Escherichia coli strain IGC_EcoliInv_1.1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489