Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   JDY60_RS00080 Genome accession   NZ_CP066172
Coordinates   12790..14559 (+) Length   589 a.a.
NCBI ID   WP_129313488.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7790..19559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS00040 (JDY60_00040) - 8342..8551 (+) 210 WP_015971692.1 hypothetical protein -
  JDY60_RS00045 (JDY60_00045) - 8541..9188 (+) 648 WP_015971693.1 hypothetical protein -
  JDY60_RS00050 (JDY60_00050) - 9205..9621 (+) 417 WP_015971694.1 hypothetical protein -
  JDY60_RS00055 (JDY60_00055) - 9608..9940 (+) 333 WP_015971695.1 phage holin -
  JDY60_RS00060 (JDY60_00060) - 9943..10830 (+) 888 WP_015971696.1 peptidoglycan amidohydrolase family protein -
  JDY60_RS00065 (JDY60_00065) - 11016..11288 (+) 273 WP_200370834.1 hypothetical protein -
  JDY60_RS00070 (JDY60_00070) - 11448..12152 (-) 705 WP_200370835.1 CD20-like domain-containing protein -
  JDY60_RS00075 (JDY60_00075) - 12345..12806 (+) 462 WP_000360526.1 MarR family winged helix-turn-helix transcriptional regulator -
  JDY60_RS00080 (JDY60_00080) rcrP 12790..14559 (+) 1770 WP_129313488.1 ABC transporter ATP-binding protein Regulator
  JDY60_RS00085 (JDY60_00085) rcrQ 14549..16309 (+) 1761 WP_200370836.1 ABC transporter ATP-binding protein Regulator
  JDY60_RS00090 (JDY60_00090) - 16406..16909 (+) 504 WP_200370837.1 phosphatase PAP2 family protein -
  JDY60_RS00095 (JDY60_00095) - 17023..17469 (+) 447 WP_000776591.1 LytTR family DNA-binding domain-containing protein -
  JDY60_RS00100 (JDY60_00100) - 17475..18149 (+) 675 WP_000725755.1 LiaF transmembrane domain-containing protein -
  JDY60_RS00105 (JDY60_00105) rpmB 18254..18442 (+) 189 WP_001140948.1 50S ribosomal protein L28 -
  JDY60_RS00110 (JDY60_00110) - 18595..18960 (+) 366 WP_000216434.1 Asp23/Gls24 family envelope stress response protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65266.56 Da        Isoelectric Point: 5.5689

>NTDB_id=453918 JDY60_RS00080 WP_129313488.1 12790..14559(+) (rcrP) [Streptococcus oralis strain SF100]
MKKLAKRIIGKEWGMIVLTILFTCFSVYLELEVPTYISQITELLGTSGTQLGELWSPAAKMMGLSLLAFMSSVAVGFFAS
HVAASYTTHLRSDIFNRVLDFSQTEIKRFSIPSLLTRTTNDITQVQMLFTMGLQVVTRGPIMAIWAIGKILGKSEYWLWA
VVVAVIVNVLMTTVLMTLAFPKQSVIQKLTDKLNSITRESLTGIRVVRAYNAEDYQDEKFEAANDEVTRLNLFVNRLMAI
MNPIMMAISSGLTLAIYWIGAYIINDASLTERLPLFSDMVVFMSYAMQVVMGFLLMGALFIVLPRTLVSAGRINQVLDLH
SSIENPSHAQTADPSVQGQVEFRDVTFRYSKNSEAVVEHVTFKAEAGQTVAFIGSTGSGKSTLVNLLPRFYDVSDGEILV
DGVNVQDYDLEDLRNKVGYIPQKAVLFSGDVKGNLDFGKSQESPLSEAAMWQALELAQSKAFIEDKEAGLASEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRVLRQELAEKTKSMTKLIVAQRISTIMDADLILVLDQGKVVGQG
THKELLATNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=453918 JDY60_RS00080 WP_129313488.1 12790..14559(+) (rcrP) [Streptococcus oralis strain SF100]
ATGAAGAAACTCGCTAAACGTATTATAGGAAAAGAGTGGGGAATGATCGTCCTTACGATTCTTTTCACTTGTTTCTCGGT
CTATCTCGAGTTAGAGGTACCGACCTACATTTCGCAAATTACAGAGTTACTGGGAACGTCTGGAACGCAGTTGGGTGAAC
TCTGGTCACCAGCTGCGAAGATGATGGGATTATCTCTCCTTGCCTTTATGTCGTCAGTAGCAGTTGGATTTTTCGCCTCC
CATGTTGCAGCGTCTTACACGACTCACTTGAGAAGCGATATTTTTAATCGAGTACTGGATTTTTCACAGACAGAGATTAA
ACGTTTTTCAATCCCCAGTCTTTTGACTCGGACGACCAATGATATCACACAGGTACAGATGCTCTTTACCATGGGATTAC
AGGTAGTGACTCGTGGGCCGATTATGGCTATCTGGGCCATTGGAAAAATCCTTGGTAAGTCCGAATACTGGCTCTGGGCA
GTCGTTGTGGCTGTTATTGTGAATGTCTTGATGACCACCGTTCTCATGACTCTGGCCTTTCCAAAACAATCTGTCATCCA
AAAATTGACAGATAAACTCAATAGCATCACTCGTGAAAGCTTGACAGGGATTCGGGTTGTTCGTGCTTATAATGCTGAGG
ATTACCAAGATGAGAAATTTGAAGCAGCCAATGATGAAGTGACGCGTCTCAATCTCTTTGTCAATCGATTGATGGCGATT
ATGAACCCGATTATGATGGCAATTTCCAGTGGTTTGACCTTAGCTATTTACTGGATTGGTGCCTATATCATCAACGATGC
AAGTTTGACAGAACGTCTGCCACTCTTTAGTGATATGGTGGTCTTCATGTCCTATGCTATGCAGGTCGTGATGGGCTTCC
TTCTCATGGGAGCACTCTTTATCGTTCTTCCTCGTACCTTGGTTTCGGCAGGACGTATCAATCAAGTATTGGATCTGCAT
TCTTCTATTGAAAATCCTAGTCATGCCCAGACAGCGGATCCTTCAGTTCAAGGACAAGTGGAATTCCGTGATGTGACTTT
CCGCTACTCTAAAAACTCAGAAGCAGTCGTGGAACATGTCACTTTCAAAGCAGAAGCGGGTCAAACCGTAGCCTTCATCG
GATCGACTGGATCAGGTAAGTCTACACTTGTCAACCTCTTGCCACGTTTTTACGACGTTTCTGATGGAGAAATCCTAGTG
GACGGAGTTAATGTGCAAGATTACGATTTGGAAGATTTGCGCAATAAGGTCGGCTATATTCCACAAAAAGCTGTACTCTT
TTCTGGAGATGTCAAGGGGAACTTGGACTTTGGTAAGAGTCAAGAAAGTCCTCTAAGTGAGGCTGCTATGTGGCAAGCTC
TTGAATTGGCCCAGTCTAAAGCATTTATCGAGGACAAGGAAGCAGGTCTTGCATCAGAAGTAGCCCAAGGTGGAACCAAC
TTCTCAGGAGGTCAAAGACAGCGTTTGGCCATTGCACGCGCCTTGGCTCGTAAACCAGAGATTCTCATCTTTGATGATTC
CTTCTCAGCCTTGGACTACAAGACAGATCGTGTCCTACGCCAAGAGCTAGCAGAGAAAACAAAATCCATGACCAAACTCA
TCGTAGCGCAACGGATTTCTACCATTATGGACGCCGACCTGATCTTAGTTTTGGATCAAGGTAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTTGCAACCAACGAAGTCTACCAAGAAATTGCCTACTCACAACTATCAAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

65.724

100

0.671