Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUR93_RS23520 Genome accession   NZ_CP054662
Coordinates   4809106..4809642 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain IGC_RcoliRes_1.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4804106..4814642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUR93_RS23500 soxR 4805834..4806298 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  HUR93_RS23505 soxS 4806384..4806707 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  HUR93_RS23510 pdeC 4806710..4808296 (-) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  HUR93_RS23515 yjcB 4808726..4809007 (+) 282 WP_001295689.1 YjcB family protein -
  HUR93_RS23520 ssb 4809106..4809642 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HUR93_RS23525 uvrA 4809896..4812718 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  HUR93_RS23530 yjbR 4812753..4813109 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  HUR93_RS23535 yjbQ 4813113..4813529 (-) 417 WP_000270383.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HUR93_RS23540 aphA 4813640..4814353 (-) 714 WP_001317548.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=453918 HUR93_RS23520 WP_000168305.1 4809106..4809642(-) (ssb) [Escherichia coli strain IGC_RcoliRes_1.1]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=453918 HUR93_RS23520 WP_000168305.1 4809106..4809642(-) (ssb) [Escherichia coli strain IGC_RcoliRes_1.1]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489