Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6I02_RS10050 Genome accession   NZ_CP066093
Coordinates   2169924..2170514 (-) Length   196 a.a.
NCBI ID   WP_013989915.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2164924..2175514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS10030 (I6I02_10030) spx 2166252..2166650 (-) 399 WP_002886328.1 transcriptional regulator Spx -
  I6I02_RS10035 (I6I02_10035) recA 2166819..2167958 (-) 1140 WP_002889600.1 recombinase RecA Machinery gene
  I6I02_RS10040 (I6I02_10040) cinA 2167999..2169264 (-) 1266 WP_060972115.1 competence/damage-inducible protein A Machinery gene
  I6I02_RS10045 (I6I02_10045) - 2169361..2169915 (-) 555 WP_013989916.1 DNA-3-methyladenine glycosylase I -
  I6I02_RS10050 (I6I02_10050) ruvA 2169924..2170514 (-) 591 WP_013989915.1 Holliday junction branch migration protein RuvA Machinery gene
  I6I02_RS10055 (I6I02_10055) - 2170672..2170893 (-) 222 WP_013989914.1 hypothetical protein -
  I6I02_RS10060 (I6I02_10060) hexB 2171024..2172967 (-) 1944 WP_198463551.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6I02_RS10065 (I6I02_10065) - 2173018..2173323 (-) 306 WP_037603797.1 hypothetical protein -
  I6I02_RS10070 (I6I02_10070) brsR 2173502..2173939 (+) 438 WP_198463552.1 LytTR family DNA-binding domain-containing protein Regulator
  I6I02_RS10075 (I6I02_10075) - 2173936..2174391 (+) 456 WP_002889588.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21724.18 Da        Isoelectric Point: 5.6710

>NTDB_id=453821 I6I02_RS10050 WP_013989915.1 2169924..2170514(-) (ruvA) [Streptococcus salivarius strain FDAARGOS_1045]
MYDYIKGTLVKITAKYIVIEANGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPTETTKTIPSQPEGNHQLDEAMEALL
ALGYKAAELKKIKAFFEGTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=453821 I6I02_RS10050 WP_013989915.1 2169924..2170514(-) (ruvA) [Streptococcus salivarius strain FDAARGOS_1045]
ATGTATGATTACATCAAGGGAACTCTAGTGAAAATTACCGCCAAGTATATTGTTATAGAAGCAAACGGCTTAGGCTATAT
TGTTACTGTAGCGAACCCATATAGTTTTTCTGACCAGATGAATCAGACTATCCAAGTCTACCTTCATCAGGTTATTAGGG
ATGACGCCCACCTTCTTTTTGGTTTCCATACTGAAGATGAAAAAGAGGTCTTCCTTAAGCTTATTTCAGTTTCTGGAATA
GGTCCGACGACTGCTCTAGCCATTGTTGCTGTAGATGATAATCAAGGCTTGGTTGCTGCCATTGATAATAGTGACATCAA
GTACTTGATGAAGTTTCCAAAGATTGGTAAAAAGACAGCCCAGCAAATGGTTCTAGACTTGGCAGGGAAATTTGCAGAGT
TACCAACAGAAACGACCAAGACGATACCAAGTCAACCTGAAGGGAATCATCAGTTGGATGAGGCTATGGAAGCCTTGCTT
GCTCTTGGTTATAAAGCTGCAGAACTTAAGAAAATCAAAGCCTTCTTCGAAGGTACTAATGAAACGGCAGAGCAATACAT
TAAATCAGCTCTTAAGATGTTGATGAAATGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(152-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

65.5

100

0.668
  ruvA Streptococcus pneumoniae R6

65.5

100

0.668
  ruvA Streptococcus pneumoniae D39

65.5

100

0.668
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.429