Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HUB98_RS16975 Genome accession   NZ_CP054614
Coordinates   3764935..3765417 (-) Length   160 a.a.
NCBI ID   WP_110896917.1    Uniprot ID   A0A2V4VUR0
Organism   Paenibacillus barcinonensis strain KACC11450     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3759935..3770417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUB98_RS16950 (HUB98_16950) opp4B 3760103..3761065 (-) 963 WP_110896920.1 oligopeptide ABC transporter permease -
  HUB98_RS16955 (HUB98_16955) - 3761073..3762005 (-) 933 WP_110896919.1 ATP-binding cassette domain-containing protein -
  HUB98_RS16960 (HUB98_16960) - 3762010..3763008 (-) 999 WP_110897080.1 ABC transporter ATP-binding protein -
  HUB98_RS16965 (HUB98_16965) - 3763761..3764360 (-) 600 WP_110896918.1 M15 family metallopeptidase -
  HUB98_RS16970 (HUB98_16970) rpsR 3764608..3764877 (-) 270 WP_090923587.1 30S ribosomal protein S18 -
  HUB98_RS16975 (HUB98_16975) ssbA 3764935..3765417 (-) 483 WP_110896917.1 single-stranded DNA-binding protein Machinery gene
  HUB98_RS16980 (HUB98_16980) rpsF 3765470..3765763 (-) 294 WP_024629534.1 30S ribosomal protein S6 -
  HUB98_RS16985 (HUB98_16985) - 3765979..3766173 (+) 195 WP_110896916.1 YjzC family protein -
  HUB98_RS16995 (HUB98_16995) - 3766825..3767034 (-) 210 WP_110896915.1 DUF951 domain-containing protein -
  HUB98_RS17000 (HUB98_17000) - 3767024..3767968 (-) 945 WP_244213824.1 mechanosensitive ion channel family protein -
  HUB98_RS17005 (HUB98_17005) - 3767983..3768246 (-) 264 WP_174812198.1 DUF3343 domain-containing protein -
  HUB98_RS17010 (HUB98_17010) yyaC 3768372..3768977 (+) 606 WP_110896914.1 spore protease YyaC -
  HUB98_RS17015 (HUB98_17015) - 3768952..3769452 (-) 501 WP_110896913.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17604.46 Da        Isoelectric Point: 4.8369

>NTDB_id=453822 HUB98_RS16975 WP_110896917.1 3764935..3765417(-) (ssbA) [Paenibacillus barcinonensis strain KACC11450]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLAAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESANRDGGGGGGQPMREEPSYGGGGRASNNNAARSNNQDPFSDDGKPIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=453822 HUB98_RS16975 WP_110896917.1 3764935..3765417(-) (ssbA) [Paenibacillus barcinonensis strain KACC11450]
TTGTTGAACCGTGTCATTCTGATCGGCCGGTTAACCCGGGATCCTGAATTGCGTTACACTCCAGCAGGAGTAGCCGTGAC
ACAATTTACTTTGGCCGTAGACAGACCGTTTACAAGCCAGGGGGGAGAGCGGGAAGCAGATTTTATTCCGGTCGTAACCT
GGAGACAGCTTGCTGAGACCTGTGCAAACTATTTGCGTAAAGGTCGTCTGGCTGCAGTCGAAGGACGCATTCAAGTACGG
AACTACGAAAATAACGAAGGTAAACGTGTATACGTGACCGAAGTCATTGCCGATAATGTTCGTTTCTTGGAGTCAGCTAA
CCGTGATGGCGGTGGCGGCGGGGGACAACCTATGCGTGAAGAGCCTTCTTATGGAGGCGGCGGACGTGCCAGCAACAATA
ATGCTGCGCGTAGCAACAATCAGGATCCTTTTTCCGATGACGGAAAACCGATTGATATATCGGATGATGATTTGCCATTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2V4VUR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.613
  ssb Latilactobacillus sakei subsp. sakei 23K

50.286

100

0.55
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

70

0.381