Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   I6I02_RS10080 Genome accession   NZ_CP066093
Coordinates   2174425..2176983 (-) Length   852 a.a.
NCBI ID   WP_198463553.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2169425..2181983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS10050 (I6I02_10050) ruvA 2169924..2170514 (-) 591 WP_013989915.1 Holliday junction branch migration protein RuvA Machinery gene
  I6I02_RS10055 (I6I02_10055) - 2170672..2170893 (-) 222 WP_013989914.1 hypothetical protein -
  I6I02_RS10060 (I6I02_10060) hexB 2171024..2172967 (-) 1944 WP_198463551.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6I02_RS10065 (I6I02_10065) - 2173018..2173323 (-) 306 WP_037603797.1 hypothetical protein -
  I6I02_RS10070 (I6I02_10070) brsR 2173502..2173939 (+) 438 WP_198463552.1 LytTR family DNA-binding domain-containing protein Regulator
  I6I02_RS10075 (I6I02_10075) - 2173936..2174391 (+) 456 WP_002889588.1 DUF3021 domain-containing protein -
  I6I02_RS10080 (I6I02_10080) hexA 2174425..2176983 (-) 2559 WP_198463553.1 DNA mismatch repair protein MutS Machinery gene
  I6I02_RS10085 (I6I02_10085) - 2176976..2177335 (-) 360 WP_198463554.1 YlbF family regulator -
  I6I02_RS10090 (I6I02_10090) argR 2177335..2177763 (-) 429 WP_171963598.1 arginine repressor -
  I6I02_RS10095 (I6I02_10095) argS 2177918..2179609 (+) 1692 WP_198463555.1 arginine--tRNA ligase -
  I6I02_RS10100 (I6I02_10100) purB 2180486..2181784 (-) 1299 WP_002886310.1 adenylosuccinate lyase -

Sequence


Protein


Download         Length: 852 a.a.        Molecular weight: 95547.76 Da        Isoelectric Point: 4.6556

>NTDB_id=453824 I6I02_RS10080 WP_198463553.1 2174425..2176983(-) (hexA) [Streptococcus salivarius strain FDAARGOS_1045]
MAKEKISPGMQQYLDIKENYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNADNPIPMAGVPYHSAQAYIDVLV
EMGYKVAIAEQMEDPKQAVGVVKREVVQVITPGTVVDSSKPDNANNFLVAIDKVGSRFGLAYMDVSTGEFFATELDDFSS
VCSEIQNLKAREVVVGYDLPEADEQVLVKQLNLLLSKETEVYDDVHLIDISLTDLESSVAGKLLQYVHRTQMRELSHLQK
VQHYEIKDYLQMSYATKSSLDLLENARTGKKHGSLFWLLDETKTAMGMRLLRTWIDRPLVNQATITERQNIIQVFLDNFF
ERSDLTESLKGVYDIERLASRVSFGKANPKDLIQLGHTLAQVPVIKAILDSFNDDALSRLLQELDALPELESLIRSAIDP
DAPATITEGGIIRAGFDETLDKYRKVMSEGTSWIADIEAKEREASGITTLKIDYNRKDGYYFHVTNSNLSLVPDHFFRKA
TLKNSERFGTAELAKIEGEMLEAREKSSTLEYDIFMRVREQVERYIDRLQSLAKAIATVDVLQSLAVVAETNHYVRPIFN
DEHRIVIDQGRHAVVEKVMGVQEYIPNTITFDSQTNIQLITGPNMSGKSTYMRQLALSVVVAQMGSYVPADSIDLPVFDA
IYTRIGAADDLISGQSTFMVEMMEANQAIKRATPNSLIIFDELGRGTATYDGMALAQSIIEFIHDKVGAKTMFATHYHEL
TALSNTLTHLVNVHVATLEKDGEVTFLHKIVDGPADKSYGIHVAKIAGLPADLLERADTILTQLEGDTVTIQPQEKVSSQ
EKPATETHVNEQISLFDDFTENPVLQELRDLDIYNMTPMQVMMAVADLKQKL

Nucleotide


Download         Length: 2559 bp        

>NTDB_id=453824 I6I02_RS10080 WP_198463553.1 2174425..2176983(-) (hexA) [Streptococcus salivarius strain FDAARGOS_1045]
ATGGCTAAGGAAAAAATATCTCCAGGAATGCAGCAGTATTTGGATATCAAGGAAAATTATCCAGATGCTTTTTTGCTGTT
TCGGATGGGGGATTTTTACGAATTATTTTACGATGATGCCGTTAAGGCTGCTCAAATTTTGGAAATTAGCCTAACCAGTC
GTAATAAGAACGCAGATAATCCCATTCCTATGGCAGGTGTTCCTTATCATTCGGCTCAAGCCTATATTGATGTCTTGGTT
GAGATGGGCTACAAAGTAGCCATTGCTGAGCAGATGGAGGACCCTAAACAGGCTGTTGGCGTGGTTAAGCGTGAGGTAGT
TCAGGTTATCACGCCAGGGACAGTGGTTGACAGCTCTAAACCAGATAATGCCAACAATTTCTTAGTAGCCATTGACAAGG
TTGGAAGTCGATTCGGACTGGCCTATATGGATGTGTCAACGGGTGAATTTTTTGCGACAGAGTTGGATGATTTCAGTTCA
GTTTGTAGTGAAATTCAGAATCTTAAGGCACGTGAAGTAGTCGTTGGGTATGATTTACCTGAAGCTGATGAACAAGTTTT
GGTGAAGCAACTCAACCTGCTTCTCTCCAAGGAAACAGAGGTTTACGATGATGTCCACTTGATTGACATTAGTTTGACAG
ATTTGGAAAGCAGTGTGGCGGGTAAACTTCTCCAGTATGTTCATCGTACTCAGATGCGAGAGCTCAGTCATTTACAAAAG
GTTCAGCACTATGAGATTAAAGATTACTTGCAGATGTCCTATGCGACCAAGTCAAGTTTGGATTTACTGGAAAATGCTAG
AACGGGCAAGAAACACGGATCTCTTTTCTGGCTCTTGGATGAAACCAAGACAGCTATGGGAATGCGTCTCTTGCGAACTT
GGATTGATCGTCCTTTAGTGAATCAAGCCACTATCACCGAGCGTCAGAATATTATCCAAGTTTTCTTGGACAATTTCTTT
GAGCGTAGTGACTTGACTGAGAGTCTAAAAGGTGTTTACGATATTGAGCGCCTGGCCAGTCGTGTTTCCTTTGGCAAGGC
TAATCCAAAAGATTTGATTCAACTAGGTCATACTTTGGCTCAAGTACCGGTGATTAAGGCGATTTTGGATTCTTTTAATG
ACGATGCCTTGTCACGTCTTTTACAAGAGTTAGATGCTCTGCCAGAATTAGAGAGTTTGATTCGGTCGGCTATTGATCCA
GATGCTCCTGCAACCATTACAGAAGGTGGCATTATCCGTGCTGGTTTTGATGAGACCTTGGACAAGTATCGCAAGGTGAT
GAGTGAGGGAACGTCATGGATCGCAGATATCGAAGCTAAAGAACGTGAAGCGTCTGGTATTACAACACTAAAAATTGATT
ATAACCGTAAAGATGGTTATTACTTCCATGTGACTAACTCTAACCTTAGCTTGGTTCCTGACCATTTCTTCCGCAAGGCA
ACCCTGAAAAATTCAGAGCGCTTTGGAACTGCTGAGTTGGCTAAGATAGAAGGTGAAATGCTCGAGGCACGTGAAAAGTC
ATCAACGCTAGAGTATGATATTTTCATGCGTGTCCGTGAGCAGGTTGAACGCTATATTGACCGTTTGCAATCTTTGGCTA
AAGCTATTGCGACAGTCGATGTGCTTCAGAGTCTAGCTGTTGTAGCAGAGACCAATCATTATGTTCGCCCTATTTTCAAT
GATGAGCATCGTATTGTTATTGATCAAGGCCGTCATGCAGTGGTTGAGAAGGTTATGGGAGTTCAAGAATACATCCCAAA
CACCATTACCTTTGACAGTCAGACCAATATTCAGCTCATCACAGGACCAAATATGAGTGGTAAATCCACCTATATGCGTC
AGTTAGCCTTGTCAGTAGTTGTGGCTCAGATGGGGTCTTATGTGCCAGCAGATAGTATTGACTTGCCAGTTTTTGACGCC
ATCTATACACGTATTGGTGCTGCAGATGACTTGATTTCAGGGCAGTCGACCTTCATGGTTGAGATGATGGAGGCTAACCA
GGCTATTAAGCGGGCGACACCTAATTCCTTGATTATTTTTGATGAGTTGGGACGTGGGACAGCTACCTATGACGGTATGG
CTCTGGCCCAGTCTATCATTGAGTTTATTCATGACAAGGTGGGGGCTAAAACCATGTTTGCTACCCATTATCATGAGTTG
ACAGCTCTGTCAAATACTTTGACACACCTTGTCAACGTTCATGTGGCGACACTTGAAAAGGATGGTGAGGTGACTTTCCT
TCACAAGATTGTCGATGGCCCAGCCGATAAATCTTATGGTATTCATGTGGCTAAGATTGCAGGTTTACCAGCAGATTTAC
TGGAACGTGCTGACACCATCTTGACACAACTAGAGGGCGATACAGTTACCATCCAACCTCAGGAAAAGGTATCGTCTCAA
GAGAAACCTGCCACTGAAACGCATGTCAACGAGCAAATCTCTCTCTTTGATGATTTTACTGAAAATCCAGTTCTTCAAGA
GTTGCGTGATTTAGATATTTACAACATGACACCTATGCAAGTCATGATGGCTGTAGCAGATTTAAAACAGAAACTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

74.061

100

0.741

  mutS Pseudomonas stutzeri strain ATCC 17587

35.954

100

0.365