Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HT745_RS08910 Genome accession   NZ_CP054599
Coordinates   1732299..1732805 (-) Length   168 a.a.
NCBI ID   WP_037928885.1    Uniprot ID   A0A073IYW8
Organism   Pseudosulfitobacter pseudonitzschiae strain H46     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1727299..1737805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT745_RS08885 (HT745_08890) - 1727838..1728812 (-) 975 WP_037928892.1 site-specific tyrosine recombinase XerD -
  HT745_RS08890 (HT745_08895) - 1728809..1730368 (-) 1560 WP_224769574.1 hypothetical protein -
  HT745_RS08895 (HT745_08900) - 1730358..1730507 (-) 150 WP_169741853.1 hypothetical protein -
  HT745_RS08900 (HT745_08905) - 1730588..1731184 (+) 597 WP_037928889.1 shikimate kinase -
  HT745_RS08905 (HT745_08910) aroB 1731177..1732277 (+) 1101 WP_037928886.1 3-dehydroquinate synthase -
  HT745_RS08910 (HT745_08915) ssb 1732299..1732805 (-) 507 WP_037928885.1 single-stranded DNA-binding protein Machinery gene
  HT745_RS08915 (HT745_08920) - 1733006..1733590 (+) 585 WP_051694582.1 lytic transglycosylase domain-containing protein -
  HT745_RS08920 (HT745_08925) - 1733884..1734390 (+) 507 WP_037928879.1 hypothetical protein -
  HT745_RS08925 (HT745_08930) - 1734443..1736527 (-) 2085 WP_037928874.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17832.49 Da        Isoelectric Point: 5.2868

>NTDB_id=453796 HT745_RS08910 WP_037928885.1 1732299..1732805(-) (ssb) [Pseudosulfitobacter pseudonitzschiae strain H46]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIFQEGLVRVAEQYLKKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGFGGTLTMLDGPSGGGGGGGGNYGGGGGGYDSGPSDDRYGGPSSGGGNNAPTPSR
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=453796 HT745_RS08910 WP_037928885.1 1732299..1732805(-) (ssb) [Pseudosulfitobacter pseudonitzschiae strain H46]
ATGGCTGGCTCAGTGAACAAAGTGATCCTTATCGGCAATCTGGGCCGCGATCCCGAAGTGCGCAGCTTTCAGAACGGCGG
CAAGGTGTGCAACCTGCGCATCGCCACCTCCGAGACATGGAAAGACCGAAACACCGGTGAGCGCAAAGAGCGGACCGAAT
GGCATTCGGTTGCCATCTTCCAAGAGGGGCTGGTGCGCGTTGCCGAGCAGTACCTGAAGAAGGGCTCGAAAGTGTATATC
GAAGGCCAGTTGCAAACGCGTAAATGGCAGGATCAATCCGGTCAGGACCGCTATTCGACCGAGGTTGTTCTGCAAGGGTT
CGGCGGCACGCTGACCATGCTGGACGGCCCAAGCGGTGGTGGCGGCGGCGGTGGCGGCAACTACGGTGGTGGTGGCGGCG
GCTATGACAGCGGCCCCTCGGATGACCGTTACGGTGGTCCGTCTTCCGGTGGTGGCAACAACGCGCCCACACCTTCGCGC
GACCTGGACGACGAAATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A073IYW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.335

100

0.56
  ssb Glaesserella parasuis strain SC1401

47.312

100

0.524
  ssb Neisseria gonorrhoeae MS11

42.021

100

0.47
  ssb Neisseria meningitidis MC58

42.021

100

0.47