Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   I6I02_RS07290 Genome accession   NZ_CP066093
Coordinates   1608999..1609697 (-) Length   232 a.a.
NCBI ID   WP_070839547.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_1045     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603999..1614697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I02_RS07265 (I6I02_07265) - 1605821..1606318 (+) 498 WP_045772486.1 NUDIX hydrolase -
  I6I02_RS07270 (I6I02_07270) - 1606315..1606755 (+) 441 WP_021151534.1 ASCH domain-containing protein -
  I6I02_RS07275 (I6I02_07275) - 1607031..1607207 (+) 177 WP_155213607.1 hypothetical protein -
  I6I02_RS07280 (I6I02_07280) prx 1607333..1607518 (+) 186 WP_037601381.1 Paratox Regulator
  I6I02_RS07285 (I6I02_07285) - 1607618..1608982 (-) 1365 WP_070839439.1 sensor histidine kinase -
  I6I02_RS07290 (I6I02_07290) scnR 1608999..1609697 (-) 699 WP_070839547.1 response regulator transcription factor Regulator
  I6I02_RS07295 (I6I02_07295) - 1609955..1610104 (+) 150 WP_037601371.1 lacticin 481 family lantibiotic -
  I6I02_RS07300 (I6I02_07300) - 1610133..1610282 (+) 150 WP_195918055.1 lacticin 481 family lantibiotic -
  I6I02_RS07305 (I6I02_07305) - 1610529..1610687 (+) 159 WP_080702563.1 lacticin 481 family lantibiotic -
  I6I02_RS07310 (I6I02_07310) - 1610707..1613487 (+) 2781 WP_198463363.1 type 2 lanthipeptide synthetase LanM family protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26220.55 Da        Isoelectric Point: 7.2415

>NTDB_id=453791 I6I02_RS07290 WP_070839547.1 1608999..1609697(-) (scnR) [Streptococcus salivarius strain FDAARGOS_1045]
MNFEAQLLNKRILIVDDDVSLSKSIKEVLVSRGFKNISNAYSISEGIDIFSISKIDLIILDVMLPDGEGYLLAQYIRKTS
DIPILFLTAKNNPDDEVKGLDSGGDDFVTKPFLPKTLIYRIIALLRRAYKGESELITLTSCIIDLNNASVKKEEQHLSLT
PTEIQILRKLYTNKNYIVSTEAICDTIWGIDSFGYEKSLMVHIRNIREKIELSPSKPRHLITVKGLGYKLVI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=453791 I6I02_RS07290 WP_070839547.1 1608999..1609697(-) (scnR) [Streptococcus salivarius strain FDAARGOS_1045]
ATGAATTTCGAAGCGCAGCTATTAAACAAACGGATATTAATAGTAGACGATGATGTTTCACTTAGTAAATCTATTAAAGA
AGTTTTGGTGAGCAGGGGATTTAAAAATATTAGTAATGCTTACAGTATTAGCGAAGGAATAGATATTTTTTCTATTTCTA
AAATAGATCTCATTATCCTAGATGTAATGTTGCCGGATGGAGAAGGTTATCTACTTGCTCAGTACATCAGAAAAACTTCT
GATATACCAATTTTATTTTTAACAGCCAAAAATAATCCAGATGATGAAGTTAAAGGATTAGATTCAGGTGGTGATGACTT
TGTCACAAAACCATTTCTTCCAAAAACTTTAATCTATCGTATAATTGCTTTACTGAGGAGAGCATATAAAGGAGAATCAG
AATTAATAACTTTAACTTCTTGTATCATTGATTTAAATAATGCTAGTGTAAAAAAAGAGGAACAGCATTTATCGCTAACT
CCAACTGAAATACAGATTCTAAGAAAACTATATACCAATAAAAACTATATTGTGTCAACAGAAGCAATCTGCGATACTAT
TTGGGGAATAGATAGTTTCGGATATGAAAAATCCTTAATGGTACATATTCGTAATATAAGAGAGAAGATAGAATTATCCC
CATCAAAACCACGTCACCTCATTACAGTCAAAGGGCTGGGTTATAAGTTAGTTATCTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Response regulator receiver domain (Response_reg)

(12-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

41.81

100

0.418
  vicR Streptococcus mutans UA159

37.662

99.569

0.375
  micA Streptococcus pneumoniae Cp1015

36.957

99.138

0.366