Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HR116_RS26480 Genome accession   NZ_CP054591
Coordinates   5756084..5756581 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain CDN118     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5751084..5761581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR116_RS26460 pchD 5751868..5753511 (+) 1644 WP_019371421.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  HR116_RS26465 pchC 5753508..5754263 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  HR116_RS26470 pchB 5754263..5754568 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  HR116_RS26475 pchA 5754565..5755995 (+) 1431 WP_033943565.1 isochorismate synthase PchA -
  HR116_RS26480 ssb 5756084..5756581 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  HR116_RS26485 - 5756598..5757986 (-) 1389 WP_003103910.1 MFS transporter -
  HR116_RS26490 uvrA 5758200..5761037 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA -
  HR116_RS26495 bfr 5761109..5761573 (-) 465 WP_016852423.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=453778 HR116_RS26480 WP_003114685.1 5756084..5756581(-) (ssb) [Pseudomonas aeruginosa strain CDN118]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=453778 HR116_RS26480 WP_003114685.1 5756084..5756581(-) (ssb) [Pseudomonas aeruginosa strain CDN118]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515