Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HT135_RS18735 Genome accession   NZ_CP054584
Coordinates   3643286..3643975 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain KKD1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3638286..3648975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT135_RS18700 (HT135_18695) flgN 3638467..3638949 (-) 483 WP_106019636.1 flagellar protein FlgN -
  HT135_RS18705 (HT135_18700) flgM 3638965..3639231 (-) 267 WP_106019637.1 flagellar biosynthesis anti-sigma factor FlgM -
  HT135_RS18710 (HT135_18705) - 3639311..3639730 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  HT135_RS18715 (HT135_18710) comFC 3639804..3640526 (-) 723 WP_127696434.1 phosphoribosyltransferase family protein Machinery gene
  HT135_RS18720 (HT135_18715) - 3640490..3640786 (-) 297 WP_024123028.1 late competence development ComFB family protein -
  HT135_RS18725 (HT135_18720) comFA 3640843..3642237 (-) 1395 WP_106019638.1 ATP-dependent helicase ComFA Machinery gene
  HT135_RS18730 (HT135_18725) - 3642344..3643189 (-) 846 WP_106019639.1 DegV family protein -
  HT135_RS18735 (HT135_18730) degU 3643286..3643975 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HT135_RS18740 (HT135_18735) degS 3644058..3645215 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  HT135_RS18745 (HT135_18740) - 3645432..3646085 (+) 654 WP_044159478.1 YigZ family protein -
  HT135_RS18750 (HT135_18745) - 3646085..3647263 (+) 1179 WP_024123032.1 LCP family protein -
  HT135_RS18755 (HT135_18750) - 3647335..3648411 (-) 1077 WP_010332075.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=453744 HT135_RS18735 WP_003219701.1 3643286..3643975(-) (degU) [Bacillus halotolerans strain KKD1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=453744 HT135_RS18735 WP_003219701.1 3643286..3643975(-) (degU) [Bacillus halotolerans strain KKD1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1