Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOC67_RS22345 Genome accession   NZ_CP054572
Coordinates   4826778..4827275 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas sp. FDAARGOS_761     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4821778..4832275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC67_RS22325 (FOC67_22325) pchD 4822564..4824207 (+) 1644 WP_009316327.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  FOC67_RS22330 (FOC67_22330) pchC 4824204..4824959 (+) 756 WP_174707751.1 pyochelin biosynthesis editing thioesterase PchC -
  FOC67_RS22335 (FOC67_22335) pchB 4824959..4825264 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  FOC67_RS22340 (FOC67_22340) pchA 4825261..4826691 (+) 1431 WP_009316330.1 isochorismate synthase PchA -
  FOC67_RS22345 (FOC67_22345) ssb 4826778..4827275 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  FOC67_RS22350 (FOC67_22350) - 4827292..4828680 (-) 1389 WP_009316331.1 MFS transporter -
  FOC67_RS22355 (FOC67_22355) uvrA 4828894..4831731 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA -
  FOC67_RS22360 (FOC67_22360) bfr 4831803..4832267 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=453573 FOC67_RS22345 WP_003114685.1 4826778..4827275(-) (ssb) [Pseudomonas sp. FDAARGOS_761]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=453573 FOC67_RS22345 WP_003114685.1 4826778..4827275(-) (ssb) [Pseudomonas sp. FDAARGOS_761]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAACTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515