Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FOC72_RS08055 Genome accession   NZ_CP054570
Coordinates   1679224..1679718 (-) Length   164 a.a.
NCBI ID   WP_002896496.1    Uniprot ID   A0A2X3XJA2
Organism   Streptococcus sanguinis strain FDAARGOS_770     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1674224..1684718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC72_RS08025 (FOC72_08025) - 1674945..1675619 (+) 675 WP_002896490.1 DUF1129 domain-containing protein -
  FOC72_RS08030 (FOC72_08030) - 1675637..1675846 (-) 210 WP_002896491.1 DUF1648 domain-containing protein -
  FOC72_RS08035 (FOC72_08035) - 1675846..1677456 (-) 1611 WP_050540517.1 hypothetical protein -
  FOC72_RS08040 (FOC72_08040) - 1677383..1678096 (-) 714 WP_002896494.1 ABC transporter ATP-binding protein -
  FOC72_RS08045 (FOC72_08045) - 1678238..1678894 (-) 657 WP_002896495.1 TetR/AcrR family transcriptional regulator -
  FOC72_RS08050 (FOC72_08050) rpsR 1678948..1679187 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  FOC72_RS08055 (FOC72_08055) ssbA 1679224..1679718 (-) 495 WP_002896496.1 single-stranded DNA-binding protein Machinery gene
  FOC72_RS08060 (FOC72_08060) rpsF 1679730..1680020 (-) 291 WP_002896497.1 30S ribosomal protein S6 -
  FOC72_RS08065 (FOC72_08065) hutI 1680199..1681464 (-) 1266 WP_002896498.1 imidazolonepropionase -
  FOC72_RS08070 (FOC72_08070) - 1681664..1683694 (+) 2031 WP_002896499.1 urocanate hydratase -
  FOC72_RS08075 (FOC72_08075) ftcD 1683814..1684713 (+) 900 WP_002896500.1 glutamate formimidoyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18104.75 Da        Isoelectric Point: 4.7187

>NTDB_id=453512 FOC72_RS08055 WP_002896496.1 1679224..1679718(-) (ssbA) [Streptococcus sanguinis strain FDAARGOS_770]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRSNREGQSSGGYGGNSFGGSSAPSYGSADSSNQVPNFSRDESPFGNSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=453512 FOC72_RS08055 WP_002896496.1 1679224..1679718(-) (ssbA) [Streptococcus sanguinis strain FDAARGOS_770]
ATGATTAATAACGTTGTACTGGTGGGTCGTATGACCCGTGATGCCGAGCTTCGCTATACTCCGCAGAATCAAGCGGTCGC
AACATTTACTCTGGCTGTCAATCGCAACTTTAAAAATCAAAGTGGCGAGCGAGAAGCAGACTTTATCAATGTTGTCATCT
GGCGTCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCCCTGATCGGAATTACAGGCCGTATTCAAACGCGT
AACTACGAGAACCAGCAAGGCCAGCGTGTCTATGTCACAGAAGTTGTTGCGGACAATTTCCAACTTTTGGAAAGCCGCTC
TAATCGTGAAGGTCAGTCATCTGGCGGTTACGGTGGAAACAGCTTCGGCGGCAGCTCTGCTCCAAGTTATGGCAGTGCAG
ACTCGTCTAACCAAGTACCGAACTTTTCTCGTGATGAGAGCCCATTTGGAAATTCTAACCCAATGGATATCTCAGACGAC
GATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X3XJA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.61
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.585
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

64.634

0.366
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.724

70.732

0.366