Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   I6H78_RS09395 Genome accession   NZ_CP066059
Coordinates   1084245..1084481 (-) Length   78 a.a.
NCBI ID   WP_232619926.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079245..1089481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS05245 (I6H78_05245) radA 1079464..1080828 (-) 1365 WP_198460229.1 DNA repair protein RadA Machinery gene
  I6H78_RS05250 (I6H78_05250) - 1080868..1081356 (-) 489 WP_198459018.1 hypothetical protein -
  I6H78_RS05255 (I6H78_05255) - 1081420..1081863 (-) 444 WP_198459019.1 dUTP diphosphatase -
  I6H78_RS05265 (I6H78_05265) tadA 1082049..1082516 (-) 468 WP_033629129.1 tRNA adenosine(34) deaminase TadA -
  I6H78_RS05270 (I6H78_05270) - 1082717..1084003 (-) 1287 WP_198459020.1 adenylosuccinate synthase -
  I6H78_RS09395 comW 1084245..1084481 (-) 237 WP_232619926.1 sigma(X)-activator ComW Regulator

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9570.19 Da        Isoelectric Point: 9.3157

>NTDB_id=453502 I6H78_RS09395 WP_232619926.1 1084245..1084481(-) (comW) [Streptococcus oralis strain FDAARGOS_1021]
MLQKFYDRAFVFLKLVEQEYAFLGQSCAEWESLHLRFLLYYLIRFKIKSDRDFSLYHFRTAYRLYLDKLLQGGTTLIQ

Nucleotide


Download         Length: 237 bp        

>NTDB_id=453502 I6H78_RS09395 WP_232619926.1 1084245..1084481(-) (comW) [Streptococcus oralis strain FDAARGOS_1021]
ATGCTTCAGAAATTTTATGACCGAGCATTTGTCTTTTTGAAACTAGTTGAACAAGAATATGCCTTTTTAGGCCAGAGTTG
TGCAGAGTGGGAATCACTTCATCTTCGGTTTTTACTATATTACTTAATCCGATTTAAAATTAAAAGTGATAGGGACTTTT
CTCTGTATCACTTTAGAACAGCTTATCGTCTATATCTAGATAAATTACTGCAAGGTGGTACAACTCTCATCCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus mitis NCTC 12261

52.113

91.026

0.474
  comW Streptococcus mitis SK321

48.571

89.744

0.436
  comW Streptococcus pneumoniae Rx1

45.714

89.744

0.41
  comW Streptococcus pneumoniae D39

45.714

89.744

0.41
  comW Streptococcus pneumoniae R6

45.714

89.744

0.41
  comW Streptococcus pneumoniae TIGR4

45.714

89.744

0.41