Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FOC81_RS28845 Genome accession   NZ_CP054569
Coordinates   6182626..6183138 (+) Length   170 a.a.
NCBI ID   WP_062680943.1    Uniprot ID   A0A6J5B160
Organism   Achromobacter denitrificans strain FDAARGOS_787     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6177626..6188138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC81_RS28835 (FOC81_28835) uvrA 6178078..6180963 (-) 2886 WP_174717261.1 excinuclease ABC subunit UvrA -
  FOC81_RS28840 (FOC81_28840) - 6181141..6182325 (+) 1185 WP_174717262.1 MFS transporter -
  FOC81_RS28845 (FOC81_28845) ssb 6182626..6183138 (+) 513 WP_062680943.1 single-stranded DNA-binding protein Machinery gene
  FOC81_RS28850 (FOC81_28850) - 6183314..6183793 (+) 480 WP_088147275.1 hypothetical protein -
  FOC81_RS28855 (FOC81_28855) - 6183804..6185516 (+) 1713 WP_088147274.1 hypothetical protein -
  FOC81_RS28860 (FOC81_28860) - 6185527..6185721 (+) 195 WP_174717263.1 hypothetical protein -
  FOC81_RS28865 (FOC81_28865) - 6185718..6186299 (+) 582 WP_088148837.1 hypothetical protein -
  FOC81_RS28870 (FOC81_28870) - 6186309..6187859 (+) 1551 WP_062680952.1 AAA family ATPase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18377.39 Da        Isoelectric Point: 5.9656

>NTDB_id=453469 FOC81_RS28845 WP_062680943.1 6182626..6183138(+) (ssb) [Achromobacter denitrificans strain FDAARGOS_787]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSTWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGASYGGGGGYDDAPRQQRAPAQRPAPQQRPAPAAAPASSGAN
LADMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=453469 FOC81_RS28845 WP_062680943.1 6182626..6183138(+) (ssb) [Achromobacter denitrificans strain FDAARGOS_787]
ATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGACGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCGGC
AATCTGCAATATGTCCATTGCCACCACCTCCACCTGGAAAGACAAGGCGTCGGGCGAACGCCGCGAAGAAACGGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGCCGTTCGGTCTACATCGAAGGC
CGCCTGAAGACGCGCAAGTGGCAAGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTCGCCGACCAGATGCA
GATGCTGGGCGGCCGCGAAGACGGCGGCGGCGGTGGCGCCAGCTACGGTGGTGGCGGCGGCTACGACGACGCGCCGCGCC
AGCAGCGCGCGCCGGCGCAGCGCCCGGCGCCCCAGCAGCGCCCGGCTCCCGCGGCGGCTCCGGCCAGCAGCGGCGCCAAC
CTGGCGGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6J5B160

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.645

100

0.588
  ssb Neisseria gonorrhoeae MS11

52.198

100

0.559
  ssb Glaesserella parasuis strain SC1401

50

100

0.547
  ssb Neisseria meningitidis MC58

51.381

100

0.547