Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   I6H72_RS06775 Genome accession   NZ_CP066055
Coordinates   1356251..1356841 (+) Length   196 a.a.
NCBI ID   WP_006269179.1    Uniprot ID   F9PAB6
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1351251..1361841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS06760 (I6H72_06760) - 1352771..1353235 (-) 465 Protein_1319 DUF3021 domain-containing protein -
  I6H72_RS06765 (I6H72_06765) - 1353232..1353660 (-) 429 WP_232619561.1 LytTR family DNA-binding domain-containing protein -
  I6H72_RS06770 (I6H72_06770) hexB 1353919..1355865 (+) 1947 WP_020998097.1 DNA mismatch repair endonuclease MutL Machinery gene
  I6H72_RS06775 (I6H72_06775) ruvA 1356251..1356841 (+) 591 WP_006269179.1 Holliday junction branch migration protein RuvA Machinery gene
  I6H72_RS06780 (I6H72_06780) - 1356852..1357415 (+) 564 WP_187327920.1 DNA-3-methyladenine glycosylase I -
  I6H72_RS06785 (I6H72_06785) - 1357553..1357967 (-) 415 Protein_1324 EamA family transporter -
  I6H72_RS06790 (I6H72_06790) - 1358128..1358983 (-) 856 Protein_1325 helix-turn-helix domain-containing protein -
  I6H72_RS06795 (I6H72_06795) - 1359366..1359635 (+) 270 WP_232619562.1 bacteriocin, lactococcin 972 family protein -
  I6H72_RS06800 (I6H72_06800) - 1359733..1361742 (+) 2010 WP_198457736.1 ABC transporter permease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21542.91 Da        Isoelectric Point: 5.3389

>NTDB_id=453347 I6H72_RS06775 WP_006269179.1 1356251..1356841(+) (ruvA) [Streptococcus constellatus strain FDAARGOS_1015]
MYEYFKGILSKITAKYIVVEVGQIGYILHVANPYAYSGQVNQEIQVFVHQVVREDAQLLYGFGTEDEKQLFLNLISVSGI
GPVSALAIIAADDNAGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVATGAPAESKVSVQTADNQELEEAMEAML
ALGYRAAELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=453347 I6H72_RS06775 WP_006269179.1 1356251..1356841(+) (ruvA) [Streptococcus constellatus strain FDAARGOS_1015]
ATGTACGAATATTTTAAAGGAATTTTAAGTAAAATCACAGCCAAATATATTGTAGTGGAGGTGGGGCAAATTGGCTATAT
CCTGCATGTGGCAAATCCCTATGCCTATTCAGGTCAGGTCAATCAGGAGATTCAAGTTTTTGTTCATCAGGTGGTTAGAG
AGGATGCCCAGCTCCTCTACGGTTTTGGCACAGAAGATGAAAAACAGCTTTTTCTCAATTTGATTTCGGTTTCTGGTATT
GGCCCCGTTTCTGCTCTTGCGATAATCGCAGCCGATGATAATGCTGGATTGGTGCAAGCCATTGAGCAGAAAAACATCAC
CTATCTGACCAAGTTTCCCAAGATAGGCAAAAAGACAGCCCAGCAGATGGTGTTGGACTTGGAAGGTAAAGTGGTAGCAA
CAGGTGCGCCAGCGGAAAGCAAGGTTTCCGTCCAGACTGCAGATAATCAGGAGTTGGAAGAAGCCATGGAAGCCATGCTG
GCTCTGGGCTACAGGGCTGCTGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACGACAGATACAGCTGAAAACTACAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9PAB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

84.772

100

0.852
  ruvA Streptococcus pneumoniae R6

84.772

100

0.852
  ruvA Streptococcus pneumoniae D39

84.772

100

0.852
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.951

100

0.439