Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HUF98_RS01020 Genome accession   NZ_CP054560
Coordinates   228298..228879 (+) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain YC103     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 223298..233879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUF98_RS00995 (HUF98_00995) - 223919..224272 (+) 354 WP_000580165.1 DUF1304 domain-containing protein -
  HUF98_RS01000 (HUF98_01000) - 224325..224666 (+) 342 WP_000263329.1 GlpM family protein -
  HUF98_RS01005 (HUF98_01005) tenA 224716..225390 (-) 675 WP_000899418.1 thiaminase II -
  HUF98_RS01010 (HUF98_01010) - 225653..226735 (+) 1083 WP_140951781.1 DUF475 domain-containing protein -
  HUF98_RS01015 (HUF98_01015) - 226882..228246 (+) 1365 WP_001986480.1 MFS transporter -
  HUF98_RS01020 (HUF98_01020) ssb 228298..228879 (+) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  HUF98_RS01025 (HUF98_01025) - 228920..229243 (-) 324 WP_000082714.1 AzlD domain-containing protein -
  HUF98_RS01030 (HUF98_01030) - 229240..229935 (-) 696 WP_140951780.1 AzlC family ABC transporter permease -
  HUF98_RS01035 (HUF98_01035) - 230004..230552 (+) 549 WP_000081859.1 helix-turn-helix domain-containing protein -
  HUF98_RS01040 (HUF98_01040) - 230858..232300 (+) 1443 WP_000718864.1 amino acid permease -
  HUF98_RS01045 (HUF98_01045) - 232361..233860 (-) 1500 WP_001257162.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=453281 HUF98_RS01020 WP_001215080.1 228298..228879(+) (ssb) [Acinetobacter baumannii strain YC103]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=453281 HUF98_RS01020 WP_001215080.1 228298..228879(+) (ssb) [Acinetobacter baumannii strain YC103]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGCGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394